Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G38110 - ( ASF1B (ANTI- SILENCING FUNCTION 1B) )
49 Proteins interacs with AT5G38110| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G20930
   | Experimentalprotein kinase assaytwo hybrid | FSW = 0.0342
| Unknown | TSL (TOUSLED) KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G27090
| Predictedtwo hybrid | FSW = 0.2163
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
| AT3G47520
| PredictedPhenotypic Enhancement | FSW = 0.0772
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT2G20450
| Predictedtwo hybridCo-expression | FSW = 0.0149
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT4G36130
| PredictedPhenotypic Enhancement | FSW = 0.0960
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
| AT4G36750
| Predictedtwo hybrid | FSW = 0.1759
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0327
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G11320
| Predictedtwo hybrid | FSW = 0.0800
| Unknown | UNKNOWN PROTEIN |
| AT3G45770
| Predictedtwo hybrid | FSW = 0.2233
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
| AT5G65430
| PredictedPhenotypic Suppression | FSW = 0.0766
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G55920
| PredictedPhenotypic Enhancement | FSW = 0.1373
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
| AT3G55400
| PredictedPhenotypic Enhancement | FSW = 0.0980
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT3G54670
| PredictedPhenotypic Enhancement | FSW = 0.0416
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
| ATCG00900 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S7 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
| AT2G42590
| Predictedtwo hybrid | FSW = 0.1836
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G26340
| Predictedtwo hybrid | FSW = 0.1361
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G19310
| PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0122
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
| AT4G34430
| PredictedPhenotypic Suppression | FSW = 0.0285
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT2G34450
| PredictedPhenotypic Enhancement | FSW = 0.1689
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
| AT3G18730
| PredictedAffinity Capture-MS | FSW = 0.0615
| Unknown | TSK (TONSOKU) PROTEIN BINDING |
| AT2G33610
| PredictedPhenotypic SuppressionCo-expression | FSW = 0.0329
| Unknown | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
| AT5G64630
| Predictedin vivoAffinity Capture-MS | FSW = 0.0271
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G76300
| PredictedPhenotypic Enhancement | FSW = 0.1201
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
| AT1G65470
| Predictedin vivoAffinity Capture-MS | FSW = 0.0111
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
| AT2G47210
| Predictedtwo hybrid | FSW = 0.0839
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
| AT3G29800
| PredictedPhenotypic Enhancement | FSW = 0.1077
| Unknown | AAA-TYPE ATPASE FAMILY |
| AT1G10060
| Predictedtwo hybrid | FSW = 0.1358
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
| AT4G33730
| PredictedPhenotypic Suppression | FSW = 0.1073
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT4G15900
| Predictedtwo hybrid | FSW = 0.1513
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT2G03600
| PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | ATUPS3 (ARABIDOPSIS THALIANA UREIDE PERMEASE 3) |
| AT4G15930
| PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | MICROTUBULE MOTOR |
| AT4G27640
| PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
| AT5G48690
| PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL EUKARYOTE (INTERPROIPR015940) PUG (INTERPROIPR006567) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UBIQUITIN-ASSOCIATED (UBA)/TS-N DOMAIN-CONTAINING PROTEIN (TAIRAT1G048501) HAS 6741 BLAST HITS TO 4773 PROTEINS IN 362 SPECIES ARCHAE - 9 BACTERIA - 355 METAZOA - 2762 FUNGI - 868 PLANTS - 184 VIRUSES - 19 OTHER EUKARYOTES - 2544 (SOURCE NCBI BLINK) |
| AT5G67540
| PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT1G07880
| Predictedtwo hybrid | FSW = 0.1167
| Unknown | ATMPK13 MAP KINASE/ KINASE |
| AT1G29230
| PredictedPhenotypic Enhancement | FSW = 0.1471
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G23070
| PredictedPhenotypic Suppression | FSW = 0.0380
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT2G36260
| PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.1379
| Unknown | IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE |
| AT3G11830
| Predictedinterologs mapping | FSW = 0.0587
| Unknown | CHAPERONIN PUTATIVE |
| AT5G19090
| Predictedtwo hybrid | FSW = 0.1935
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
| AT5G19300
| PredictedPhenotypic Enhancement | FSW = 0.0714
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
| AT1G10810
| Predictedinterologs mapping | FSW = 0.0128
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT1G15440
| PredictedPhenotypic Suppression | FSW = 0.0157
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G76920
| PredictedPhenotypic Suppression | FSW = 0.0978
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
| AT2G46650
| Predictedtwo hybrid | FSW = 0.2235
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
| AT3G05960
| PredictedPhenotypic Suppression | FSW = 0.0645
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G30820
| Predictedtwo hybrid | FSW = 0.1852
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
| AT5G24840
| PredictedSynthetic Rescue | FSW = 0.0359
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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