Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G38460 - ( ALG6 ALG8 glycosyltransferase family protein )
26 Proteins interacs with AT5G38460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01720 | PredictedPhenotypic Enhancement | FSW = 0.2090
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT5G66680 | Predictedsynthetic growth defectPhenotypic Enhancementinterologs mappingPhenotypic Enhancement | FSW = 0.1913
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT2G45200 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2766
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT2G30710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3608
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT5G15700 | PredictedSynthetic Lethality | FSW = 0.1588
| Unknown | DNA-DIRECTED RNA POLYMERASE (RPOT2) |
AT2G24120 | Predictedinteraction prediction | FSW = 0.1333
| Unknown | SCA3 (SCABRA 3) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G23630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1880
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.1368
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT3G51460 | Predictedinterologs mapping | FSW = 0.1048
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0203
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G17520 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1857
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G68990 | PredictedSynthetic Lethality | FSW = 0.1500
| Unknown | DNA-DIRECTED RNA POLYMERASE MITOCHONDRIAL (RPOMT) |
AT1G10130 | Predictedinterologs mapping | FSW = 0.1261
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G76400 | Predictedinterologs mapping | FSW = 0.0977
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.1303
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT2G44660 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.5878
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT1G08750 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1590
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G16560 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3297
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G20575 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2514
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.2582
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G48760 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1731
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G57600 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2516
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.3664
| Unknown | CATALYTIC/ TRANSFERASE |
AT3G06483 | Predictedbiochemical | FSW = 0.0117
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT5G52210 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1550
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT1G09460 | Predictedinterologs mapping | FSW = 0.2414
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454