Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  


AtPIN will be upgraded. Please send your suggestions here

AT5G38480 - ( GRF3 (GENERAL REGULATORY FACTOR 3) ATP binding / protein binding / protein phosphorylated amino acid binding )

57 Proteins interacs with AT5G38480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0775

Class A:

plasma membrane

peroxisome

cytosol

Class B:

vacuole

nucleus

cytoskeleton

Class D:

cytosol (p = 0.67)

 GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G37130

Experimental

two hybrid

FSW = 0.1847

Class A:

plasma membrane

Class B:

vacuole

peroxisome

cytosol

Class D:

cytosol (p = 0.67)

 NIA2 (NITRATE REDUCTASE 2) NITRATE REDUCTASE (NADH)/ NITRATE REDUCTASE
AT4G09000

Experimental

pull down

FSW = 0.3203

Class A:

plasma membrane

Class B:

plastid

peroxisome

nucleus

cytosol

Class D:

cytosol (p = 0.67)

 14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1)
AT4G08920

Experimental

pull down

FSW = 0.0296

Class A:

cytosol

Class B:

plasma membrane

peroxisome

nucleus

Class D:

cytosol (p = 0.67)

 CRY1 (CRYPTOCHROME 1) ATP BINDING / BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE
AT5G10450

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1107

Class C:

plasma membrane

peroxisome

cytosol

 GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G42590

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1340

Class C:

plasma membrane

peroxisome

cytosol

 GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G35160

Predicted

Phylogenetic profile method

FSW = 0.2408

Class C:

plasma membrane

cytosol

 GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G34580

Predicted

Dosage Growth Defect

FSW = 0.0685

Class C:

plasma membrane

cytosol

 COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT4G29810

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0206

Class C:

plasma membrane

cytosol

 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE
AT1G12360

Predicted

Dosage Growth Defect

FSW = 0.0864

Class C:

plasma membrane

 KEU (KEULE) PROTEIN TRANSPORTER
AT1G16920

Predicted

Dosage Growth Defect

FSW = 0.0308

Class C:

plasma membrane

 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT3G02520

Predicted

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

two hybrid

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

Phylogenetic profile method

Co-expression

FSW = 0.4892

Class C:

plasma membrane

 GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G08530

Predicted

interologs mapping

interaction prediction

FSW = 0.0265

Class C:

plasma membrane

 CLATHRIN HEAVY CHAIN PUTATIVE
AT3G12110

Predicted

Dosage Growth Defect

FSW = 0.0220

Class C:

plasma membrane

 ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G50360

Predicted

Affinity Capture-MS

FSW = 0.0100

Class C:

plasma membrane

 ATCEN2 (CENTRIN2) CALCIUM ION BINDING
AT5G16050

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3400

Class C:

plasma membrane

 GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G12480

Predicted

biochemical

FSW = 0.0290

Class C:

plasma membrane

 CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G22300

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1443

Class C:

plasma membrane

 GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G09900

Predicted

Dosage Growth Defect

FSW = 0.0372

Class C:

plasma membrane

 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT3G58680

Predicted

two hybrid

interaction prediction

FSW = 0.0167

Class C:

cytosol

 MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT5G23670

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0190

Unknown

 LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT4G04910

Predicted

interologs mapping

FSW = 0.0285

Unknown

 NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

 PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G65430

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0868

Unknown

 GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G63110

Predicted

Affinity Capture-Western

FSW = 0.0199

Unknown

 HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT3G04770

Predicted

two hybrid

interaction prediction

FSW = 0.0120

Unknown

 RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G08720

Predicted

synthetic growth defect

FSW = 0.0511

Unknown

 S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE
AT2G42810

Predicted

two hybrid

interaction prediction

FSW = 0.0127

Unknown

 PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G15475

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0272

Unknown

 F-BOX FAMILY PROTEIN (FBL4)
AT4G24040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0199

Unknown

 TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT5G09350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

two hybrid

co-fractionation

Co-fractionation

Dosage Growth Defect

Affinity Capture-Western

interaction prediction

FSW = 0.1279

Unknown

 PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G09740

Predicted

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0305

Unknown

 HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10390Predicted

Protein-peptide

Reconstituted Complex

FSW = 0.0288

Unknown

 HISTONE H3
AT5G10400Predicted

Protein-peptide

Reconstituted Complex

FSW = 0.0339

Unknown

 HISTONE H3
AT1G04160

Predicted

Dosage Growth Defect

FSW = 0.0636

Unknown

 XIB (MYOSIN XI B) MOTOR
AT1G11650

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

 RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE
AT1G54390

Predicted

Synthetic Lethality

FSW = 0.0672

Unknown

 PHD FINGER PROTEIN-RELATED
AT2G01600

Predicted

Affinity Capture-MS

FSW = 0.0195

Unknown

 EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT2G27970

Predicted

Affinity Capture-MS

FSW = 0.0109

Unknown

 CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G32850

Predicted

Affinity Capture-MS

FSW = 0.0357

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT2G37840

Predicted

biochemical

FSW = 0.0204

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT2G39840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0461

Unknown

 TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G45500

Predicted

Affinity Capture-MS

FSW = 0.0328

Unknown

 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G01090

Predicted

Affinity Capture-MS

FSW = 0.0744

Unknown

 AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G06483

Predicted

biochemical

FSW = 0.0151

Unknown

 PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G56640

Predicted

Dosage Growth Defect

FSW = 0.0797

Unknown

 EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT4G11920

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

 CCS52A2 SIGNAL TRANSDUCER
AT4G14160

Predicted

Dosage Growth Defect

FSW = 0.0246

Unknown

 TRANSPORT PROTEIN PUTATIVE
AT4G34450

Predicted

Dosage Growth Defect

FSW = 0.0123

Unknown

 COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT5G04510

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

 PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE
AT5G21170

Predicted

Affinity Capture-MS

FSW = 0.0211

Unknown

 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT5G35980

Predicted

Affinity Capture-Western

FSW = 0.0246

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT5G42190

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

 ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G17700

Predicted

Phenotypic Suppression

FSW = 0.0656

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT1G26480

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2380

Unknown

 GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G34760

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.2645

Unknown

 GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G78220

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3889

Unknown

 GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMP

TAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71

         

This page takes 0.875 seconds to be build.