Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G38480 - ( GRF3 (GENERAL REGULATORY FACTOR 3) ATP binding / protein binding / protein phosphorylated amino acid binding )
57 Proteins interacs with AT5G38480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0775
| Class A:plasma membraneperoxisomecytosolClass B:vacuolenucleuscytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G37130 | Experimentaltwo hybrid | FSW = 0.1847
| Class A:plasma membraneClass B:vacuoleperoxisomecytosolClass D:cytosol (p = 0.67) | NIA2 (NITRATE REDUCTASE 2) NITRATE REDUCTASE (NADH)/ NITRATE REDUCTASE |
AT4G09000 | Experimentalpull down | FSW = 0.3203
| Class A:plasma membraneClass B:plastidperoxisomenucleuscytosolClass D:cytosol (p = 0.67) | 14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1) |
AT4G08920 | Experimentalpull down | FSW = 0.0296
| Class A:cytosolClass B:plasma membraneperoxisomenucleusClass D:cytosol (p = 0.67) | CRY1 (CRYPTOCHROME 1) ATP BINDING / BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE |
AT5G10450 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1107
| Class C:plasma membraneperoxisomecytosol | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G42590 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1340
| Class C:plasma membraneperoxisomecytosol | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G35160 | PredictedPhylogenetic profile method | FSW = 0.2408
| Class C:plasma membranecytosol | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G34580 | PredictedDosage Growth Defect | FSW = 0.0685
| Class C:plasma membranecytosol | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT4G29810 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0206
| Class C:plasma membranecytosol | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT1G12360 | PredictedDosage Growth Defect | FSW = 0.0864
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
AT1G16920 | PredictedDosage Growth Defect | FSW = 0.0308
| Class C:plasma membrane | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT3G02520 | PredictedPhenotypic EnhancementSynthetic LethalitySynthetic LethalitySynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridsynthetic growth defectSynthetic LethalityPhenotypic EnhancementPhylogenetic profile methodCo-expression | FSW = 0.4892
| Class C:plasma membrane | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G08530 | Predictedinterologs mappinginteraction prediction | FSW = 0.0265
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
AT3G12110 | PredictedDosage Growth Defect | FSW = 0.0220
| Class C:plasma membrane | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G50360 | PredictedAffinity Capture-MS | FSW = 0.0100
| Class C:plasma membrane | ATCEN2 (CENTRIN2) CALCIUM ION BINDING |
AT5G16050 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3400
| Class C:plasma membrane | GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G12480 | Predictedbiochemical | FSW = 0.0290
| Class C:plasma membrane | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G22300 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1443
| Class C:plasma membrane | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G09900 | PredictedDosage Growth Defect | FSW = 0.0372
| Class C:plasma membrane | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT3G58680 | Predictedtwo hybridinteraction prediction | FSW = 0.0167
| Class C:cytosol | MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT5G23670 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0190
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT4G04910 | Predictedinterologs mapping | FSW = 0.0285
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G65430 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0868
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G63110 | PredictedAffinity Capture-Western | FSW = 0.0199
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT3G04770 | Predictedtwo hybridinteraction prediction | FSW = 0.0120
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G08720 | Predictedsynthetic growth defect | FSW = 0.0511
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT2G42810 | Predictedtwo hybridinteraction prediction | FSW = 0.0127
| Unknown | PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G15475 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0272
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT4G24040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0199
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT5G09350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybridco-fractionationCo-fractionationDosage Growth DefectAffinity Capture-Westerninteraction prediction | FSW = 0.1279
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G09740 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0305
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10390 | PredictedProtein-peptideReconstituted Complex | FSW = 0.0288
| Unknown | HISTONE H3 |
AT5G10400 | PredictedProtein-peptideReconstituted Complex | FSW = 0.0339
| Unknown | HISTONE H3 |
AT1G04160 | PredictedDosage Growth Defect | FSW = 0.0636
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G11650 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
AT1G54390 | PredictedSynthetic Lethality | FSW = 0.0672
| Unknown | PHD FINGER PROTEIN-RELATED |
AT2G01600 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G27970 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G32850 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G37840 | Predictedbiochemical | FSW = 0.0204
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G39840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0461
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G45500 | PredictedAffinity Capture-MS | FSW = 0.0328
| Unknown | ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G01090 | PredictedAffinity Capture-MS | FSW = 0.0744
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G06483 | Predictedbiochemical | FSW = 0.0151
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G56640 | PredictedDosage Growth Defect | FSW = 0.0797
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G11920 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G14160 | PredictedDosage Growth Defect | FSW = 0.0246
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G34450 | PredictedDosage Growth Defect | FSW = 0.0123
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT5G04510 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G35980 | PredictedAffinity Capture-Western | FSW = 0.0246
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G17700 | PredictedPhenotypic Suppression | FSW = 0.0656
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G26480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2380
| Unknown | GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G34760 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2645
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G78220 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3889
| Unknown | GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454