Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G38620 - ( MADS-box protein (AGL73) )

33 Proteins interacs with AT5G38620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G27070

Experimental

two hybrid

FSW = 0.0886

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL53 TRANSCRIPTION FACTOR
AT1G22590

Experimental

FSW = 0.0250

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 MADS-BOX FAMILY PROTEIN
AT1G69120

Experimental

FSW = 0.2236

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G51870

Experimental

FSW = 0.0580

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL71 (AGAMOUS-LIKE 71) TRANSCRIPTION FACTOR
AT5G06500

Experimental

FSW = 0.0269

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL96 (AGAMOUS-LIKE 96) DNA BINDING / TRANSCRIPTION FACTOR
AT5G40220

Experimental

two hybrid

FSW = 0.0885

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL43 (AGAMOUS-LIKE 43) TRANSCRIPTION FACTOR
AT5G65330

Experimental

two hybrid

FSW = 0.1800

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL78 (AGAMOUS-LIKE 78) TRANSCRIPTION FACTOR
AT5G27580

Experimental

two hybrid

FSW = 0.0741

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL89 TRANSCRIPTION FACTOR
AT4G11250

Experimental

two hybrid

FSW = 0.1053

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL52 TRANSCRIPTION FACTOR
AT1G60920

Experimental

FSW = 0.0901

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL55 (AGAMOUS-LIKE 55) DNA BINDING / TRANSCRIPTION FACTOR
AT1G60880

Experimental

FSW = 0.0880

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL56 DNA BINDING / TRANSCRIPTION FACTOR
AT1G18750

Experimental

FSW = 0.0290

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL65 (AGAMOUS-LIKE 65) DNA BINDING / TRANSCRIPTION FACTOR
AT5G51860

Experimental

FSW = 0.0515

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 MADS-BOX PROTEIN (AGL72)
AT4G09960

Experimental

FSW = 0.2173

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 STK (SEEDSTICK) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G23260

Experimental

FSW = 0.2153

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT1G26310

Experimental

FSW = 0.0936

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 CAL (CAULIFLOWER) DNA BINDING / TRANSCRIPTION FACTOR
AT5G27050

Experimental

two hybrid

FSW = 0.0342

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 AGL101 TRANSCRIPTION FACTOR
AT4G18960

Experimental

FSW = 0.1563

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR
AT2G03710

Experimental

FSW = 0.1286

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SEP4 (SEPALLATA 4) DNA BINDING / TRANSCRIPTION FACTOR
AT2G42830

Experimental

FSW = 0.0936

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SHP2 (SHATTERPROOF 2) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT3G44460

Experimental

FSW = 0.0566

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 DPBF2 DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION ACTIVATOR BINDING / TRANSCRIPTION FACTOR
AT1G77080

Experimental

FSW = 0.0969

Class A:

nucleus

Class D:

mitochondrion (p = 0.82)

 MAF1 (MADS AFFECTING FLOWERING 1) TRANSCRIPTION FACTOR
AT1G71692

Experimental

FSW = 0.1899

Class B:

unclear

nucleus

Class D:

mitochondrion (p = 0.82)

 AGL12 (AGAMOUS-LIKE 12) TRANSCRIPTION FACTOR
AT3G61120

Experimental

FSW = 0.1298

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL13 (AGAMOUS-LIKE 13) DNA BINDING / TRANSCRIPTION FACTOR
AT2G22630

Experimental

FSW = 0.0923

Class D:

nucleus (p = 0.78)

 AGL17 (AGAMOUS-LIKE 17) TRANSCRIPTION FACTOR
AT3G58780

Experimental

FSW = 0.3508

Class D:

nucleus (p = 0.78)

 SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G45650

Experimental

FSW = 0.4865

Class D:

nucleus (p = 0.78)

 AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT5G38740

Experimental

two hybrid

FSW = 0.0608

Unknown

 AGL77 (AGAMOUS-LIKE 77) TRANSCRIPTION FACTOR
AT5G27960

Experimental

FSW = 0.0298

Unknown

 MADS-BOX PROTEIN (AGL90)
AT5G62165

Experimental

FSW = 0.2390

Unknown

 AGL42 (AGAMOUS LIKE 42) TRANSCRIPTION FACTOR
AT1G60040

Experimental

FSW = 0.0611

Unknown

 AGL49 (AGAMOUS-LIKE 49) TRANSCRIPTION FACTOR
AT5G58890

Experimental

FSW = 0.0290

Unknown

 AGL82 (AGAMOUS-LIKE 82) DNA BINDING / TRANSCRIPTION FACTOR
AT5G26870

Experimental

two hybrid

FSW = 0.0494

Unknown

 AGL26 TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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