Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  


AtPIN will be upgraded. Please send your suggestions here

AT5G39040 - ( ATTAP2 ATPase coupled to transmembrane movement of substances / transporter )

7 Proteins interacs with AT5G39040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G58270

Predicted

interologs mapping

FSW = 0.2177

Unknown

 STA1 (STARIK 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / TRANSPORTER
AT1G70610

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2060

Unknown

 ATTAP1 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / TRANSPORTER
AT5G53920

Predicted

pull down

FSW = 0.0656

Unknown

 RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE-RELATED
AT4G28620

Predicted

interologs mapping

Enriched domain pair

Phylogenetic profile method

FSW = 0.2060

Unknown

 ATM2 (ABC TRANSPORTER OF THE MITOCHONDRION 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / TRANSPORTER
AT3G17660

Predicted

two hybrid

FSW = 0.0529

Unknown

 AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G72460

Predicted

Gene fusion method

FSW = 0.1170

Unknown

 LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE
AT1G12775

Predicted

Gene fusion method

FSW = 0.1569

Unknown

 LOCATED IN MITOCHONDRION EXPRESSED IN 7 PLANT STRUCTURES EXPRESSED DURING F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT1G123001) HAS 27792 BLAST HITS TO 6269 PROTEINS IN 197 SPECIES ARCHAE - 2 BACTERIA - 23 METAZOA - 895 FUNGI - 767 PLANTS - 24554 VIRUSES - 0 OTHER EUKARYOTES - 1551 (SOURCE NCBI BLINK)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMP

TAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71

         

This page takes 0.150 seconds to be build.