Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39400 - ( PTEN1 phosphatase )
29 Proteins interacs with AT5G39400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | PredictedAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.0357
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G60820 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0501
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0203
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G64270 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0589
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G47510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0295
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G77210 | Predictedsynthetic growth defect | FSW = 0.0645
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G16780 | Predictedinterologs mapping | FSW = 0.0606
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
AT3G13920 | PredictedPhenotypic Suppression | FSW = 0.0221
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0299
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G08730 | PredictedPhenotypic Suppression | FSW = 0.0103
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G07780 | Predictedsynthetic growth defect | FSW = 0.2119
| Unknown | PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1) PHOSPHORIBOSYLANTHRANILATE ISOMERASE |
AT1G50030 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0210
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT3G29330 | Predictedtwo hybrid | FSW = 0.0625
| Unknown | UNKNOWN PROTEIN |
AT1G07340 | Predictedinterologs mappinginterologs mapping | FSW = 0.0549
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | UNKNOWN PROTEIN |
AT1G79210 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT1G80510 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1538
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.1058
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G16170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0414
| Unknown | UNKNOWN PROTEIN |
AT5G19510 | PredictedReconstituted ComplexAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted Complexbiochemicalco-fractionationCo-fractionationCo-purification | FSW = 0.1663
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0189
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G47970 | PredictedAffinity Capture-MS | FSW = 0.0418
| Unknown | NPL4 FAMILY PROTEIN |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G60240 | Predictedinterologs mappinginterologs mappingSynthetic Lethality | FSW = 0.0596
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0752
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G54800 | PredictedSynthetic Rescue | FSW = 0.1481
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454