Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39500 - ( pattern formation protein putative )
20 Proteins interacs with AT5G39500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.0230
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G15710 | PredictedPhenotypic Enhancement | FSW = 0.0731
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT1G18190 | Predictedtwo hybrid | FSW = 0.0994
| Unknown | GC2 (GOLGIN CANDIDATE 2) |
AT5G10450 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G32090 | PredictedPhenotypic Suppression | FSW = 0.0151
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G13445 | PredictedPhenotypic Suppression | FSW = 0.0091
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0376
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.0340
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G08335 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defect | FSW = 0.1135
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT5G10330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0860
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT3G56340 | Predictedtwo hybrid | FSW = 0.0193
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
AT2G19950 | Predictedtwo hybrid | FSW = 0.1159
| Unknown | GC1 (GOLGIN CANDIDATE 1) |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0332
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G60680 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0544
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT5G04800 | PredictedPhenotypic Suppression | FSW = 0.0301
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0441
| Unknown | ZINC ION BINDING |
AT5G19610 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0366
| Unknown | SEC7 DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454