Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39770 - ( DNA binding / endonuclease/ nuclease/ nucleic acid binding / protein binding )
25 Proteins interacs with AT5G39770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G30620 | Predictedinteraction prediction | FSW = 0.0519
| Unknown | HISTONE H12 |
AT5G59950 | Predictedinteraction prediction | FSW = 0.0108
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G40360 | Predictedinteraction prediction | FSW = 0.0489
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G63810 | Predictedinteraction prediction | FSW = 0.0227
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT5G27720 | Predictedinteraction prediction | FSW = 0.0099
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT5G08180 | Predictedinteraction prediction | FSW = 0.0508
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT3G23620 | Predictedinteraction prediction | FSW = 0.0403
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G55920 | Predictedinteraction prediction | FSW = 0.0742
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | Predictedinteraction prediction | FSW = 0.0547
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT4G25340 | Predictedinteraction prediction | FSW = 0.0037
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT4G18040 | Predictedinteraction prediction | FSW = 0.0110
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G10490 | Predictedinteraction prediction | FSW = 0.0205
| Unknown | UNKNOWN PROTEIN |
AT4G13780 | Predictedinteraction prediction | FSW = 0.0238
| Unknown | METHIONINE--TRNA LIGASE PUTATIVE / METHIONYL-TRNA SYNTHETASE PUTATIVE / METRS PUTATIVE |
AT5G26680 | Predictedinteraction prediction | FSW = 0.0190
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G63920 | Predictedinteraction prediction | FSW = 0.0547
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT1G10930 | Predictedinteraction prediction | FSW = 0.0285
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT4G25120 | Predictedinteraction prediction | FSW = 0.0338
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT2G32600 | Predictedinteraction prediction | FSW = 0.0204
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT5G46840 | Predictedinteraction prediction | FSW = 0.0362
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G18905 | Predictedinteraction prediction | FSW = 0.0296
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G41010 | Predictedinteraction prediction | FSW = 0.0159
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G14160 | Predictedinteraction prediction | FSW = 0.0303
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G05320 | Predictedinteraction prediction | FSW = 0.0067
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT3G24080 | Predictedinteraction prediction | FSW = 0.0362
| Unknown | KRR1 FAMILY PROTEIN |
AT1G78770 | Predictedinteraction prediction | FSW = 0.0032
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454