Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39810 - ( AGL98 (AGAMOUS-LIKE 98) transcription factor )

9 Proteins interacs with AT5G39810
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G43810

Experimental

protein array

FSW = 0.0404

Unknown

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410

Experimental

protein array

FSW = 0.0452

Unknown

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT1G02680

Experimental

protein array

FSW = 0.0108

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G41090

Experimental

protein array

FSW = 0.0136

Unknown

CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22)
AT4G14640

Experimental

protein array

FSW = 0.0937

Unknown

CAM8 (CALMODULIN 8) CALCIUM ION BINDING
AT5G21274

Experimental

protein array

FSW = 0.0570

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT3G51920

Experimental

protein array

FSW = 0.0616

Unknown

CAM9 (CALMODULIN 9) CALCIUM ION BINDING
AT4G11250

Predicted

Gene fusion method

FSW = 0.0863

Unknown

AGL52 TRANSCRIPTION FACTOR
AT5G38740

Predicted

Phylogenetic profile method

FSW = 0.1731

Unknown

AGL77 (AGAMOUS-LIKE 77) TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454