Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39950 - ( ATTRX2 (THIOREDOXIN 2) oxidoreductase acting on sulfur group of donors disulfide as acceptor )

13 Proteins interacs with AT5G39950
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G42980

Experimental

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FSW = 0.0400

Class A:

plasma membrane

Class B:

plastid

peroxisome

mitochondrion

extracellular

cytosol

Class D:

cytosol (p = 0.67)

ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT3G56860

Experimental

FSW = 0.0529

Unknown

UBP1 INTERACTING PROTEIN 2A (UBA2A)
AT3G47370

Predicted

biochemical

FSW = 0.0255

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT4G17730

Predicted

Affinity Capture-MS

FSW = 0.0526

Unknown

SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR
AT3G54660

Predicted

Synthetic Rescue

FSW = 0.0730

Unknown

GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE
AT2G07640

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

D2D4-DIENOYL-COA REDUCTASE-RELATED
AT5G08335

Predicted

Affinity Capture-MS

FSW = 0.0481

Unknown

ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
AT1G20693

Predicted

synthetic growth defect

FSW = 0.0184

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G26320

Predicted

Synthetic Lethality

FSW = 0.0208

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G66730

Predicted

Affinity Capture-MS

FSW = 0.3529

Unknown

ATP DEPENDENT DNA LIGASE FAMILY PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0203

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT1G59730

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1422

Unknown

ATH7 (THIOREDOXIN H-TYPE 7)
AT1G11530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0450

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454