Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G40370 - ( glutaredoxin putative )
43 Proteins interacs with AT5G40370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0171
| Class C:plasma membrane | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G04750 | PredictedSynthetic Lethality | FSW = 0.0243
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G16480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0926
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0165
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G28390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0600
| Unknown | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0582
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G18790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1005
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT5G63980 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0647
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G34450 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT2G44510 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
AT2G34440 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT3G33520 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0425
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT1G17810 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0665
| Unknown | UNKNOWN PROTEIN |
AT1G47490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.1108
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0404
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G28720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0174
| Unknown | HISTONE H2B PUTATIVE |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G13010 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G54560 | Predictedbiochemical | FSW = 0.0169
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G59580 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G13480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0058
| Unknown | FY PROTEIN BINDING |
AT5G67100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0436
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT2G47880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5333
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT3G62960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3413
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5020
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G06830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2961
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G18600 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5333
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5333
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5333
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT3G62950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5333
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT2G30540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5085
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT3G62930 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G03020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4741
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15690 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5333
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G63030 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4090
| Unknown | GLUTAREDOXIN PUTATIVE |
AT4G15670 | PredictedPhylogenetic profile method | FSW = 0.5333
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT2G47870 | PredictedPhylogenetic profile method | FSW = 0.4014
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454