Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G40530 - ( EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Methyltransferase-related (InterProIPR007823) Has 293 Blast hits to 293 proteins in 141 species Archae - 0 Bacteria - 0 Metazoa - 93 Fungi - 88 Plants - 22 Viruses - 0 Other Eukaryotes - 90 (source NCBI BLink) )
25 Proteins interacs with AT5G40530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G38510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3737
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT5G19320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2844
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.0731
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0985
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G03920 | PredictedSynthetic LethalityCo-expression | FSW = 0.0095
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G29960 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT5G35910 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT3G06720 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G65440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2659
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT3G60500 | PredictedAffinity Capture-MS | FSW = 0.0853
| Unknown | CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT1G30825 | PredictedAffinity Capture-MS | FSW = 0.0978
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT3G08650 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4360
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.0827
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G32850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2468
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G16040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1099
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G08880 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0056
| Unknown | H2AXA DNA BINDING |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.0061
| Unknown | F-BOX FAMILY PROTEIN |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | ATATG18A |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3439
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT3G12990 | PredictedAffinity Capture-MS | FSW = 0.1406
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT1G54440 | PredictedAffinity Capture-MS | FSW = 0.1154
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT1G02690 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0366
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454