Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G40530 - ( EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Methyltransferase-related (InterProIPR007823) Has 293 Blast hits to 293 proteins in 141 species Archae - 0 Bacteria - 0 Metazoa - 93 Fungi - 88 Plants - 22 Viruses - 0 Other Eukaryotes - 90 (source NCBI BLink) )

25 Proteins interacs with AT5G40530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G38510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3737

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE
AT5G19320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2844

Unknown

RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT3G49010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.0731

Unknown

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G22110

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0985

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G03920

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0095

Unknown

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0313

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G59950

Predicted

Affinity Capture-MS

FSW = 0.0576

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G29960

Predicted

Affinity Capture-MS

FSW = 0.0497

Unknown

PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT5G35910

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT3G06720

Predicted

Affinity Capture-MS

FSW = 0.0443

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT1G65440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2659

Unknown

GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT3G60500

Predicted

Affinity Capture-MS

FSW = 0.0853

Unknown

CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING
AT2G18450

Predicted

Affinity Capture-MS

FSW = 0.0433

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT1G30825

Predicted

Affinity Capture-MS

FSW = 0.0978

Unknown

DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE
AT3G08650

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.4360

Unknown

METAL TRANSPORTER FAMILY PROTEIN
AT3G47940

Predicted

Affinity Capture-MS

FSW = 0.0827

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT4G32850

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2468

Unknown

NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT5G16040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1099

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT1G08880

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0056

Unknown

H2AXA DNA BINDING
AT1G67190

Predicted

synthetic growth defect

FSW = 0.0061

Unknown

F-BOX FAMILY PROTEIN
AT3G62770

Predicted

Affinity Capture-MS

FSW = 0.0344

Unknown

ATATG18A
AT5G60870

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3439

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT3G12990

Predicted

Affinity Capture-MS

FSW = 0.1406

Unknown

RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING
AT1G54440

Predicted

Affinity Capture-MS

FSW = 0.1154

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT1G02690

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0366

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454