Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G40810 - ( cytochrome c1 putative )
17 Proteins interacs with AT5G40810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G07727 | Experimental | FSW = 0.1875
| Class B:vacuolenucleusmitochondrionClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | CYTOCHROME B (MTCYB) (COB) (CYTB) |
ATMG00960 | Experimental | FSW = 0.1000
| Unknown | ENCODES A PROTEIN OF THE MITOCHONDRIAL MEMBRANE WHICH HAS BEEN SHOWN TO BE PRESENT IN A NUMBER OF UNIDENTIFIED COMPLEXES INCLUDING A 500-KDA COMPLEX POSTULATED TO HAVE HEME LYASE ACTIVITY IN WHICH ANOTHER PROTEIN (ATCCMH AT1G15220) IS ALSO INVOLVED CYTOCHROME C BIOGENESIS ORF203 |
AT3G16890 | Experimentalco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.1455
| Unknown | PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40) |
AT3G27240 | PredictedGene fusion methodCo-expression | FSW = 0.4482
| Class C:vacuolemitochondrion | CYTOCHROME C1 PUTATIVE |
AT3G17910 | PredictedAffinity Capture-MS | FSW = 0.2424
| Class C:mitochondrion | SURF1 (SURFEIT 1) |
AT5G13430 | Predictedin vitro | FSW = 0.2717
| Class C:mitochondrion | UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE |
AT4G10040 | Predictedin vitro | FSW = 0.0418
| Class C:mitochondrion | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0238
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0024
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G12370 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT5G42970 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT2G46470 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1322
| Unknown | OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) |
AT3G48470 | PredictedPhenotypic Enhancement | FSW = 0.0195
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
AT5G28740 | Predictedtwo hybridtwo hybrid | FSW = 0.0229
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT3G09640 | PredictedReconstituted Complex | FSW = 0.0226
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.0251
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454