Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G40930 - ( TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) P-P-bond-hydrolysis-driven protein transmembrane transporter )

7 Proteins interacs with AT5G40930
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G20000

Experimental

two hybrid

FSW = 0.1735

Class A:

vacuole

mitochondrion

Class B:

unclear

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL
AT5G09420

Experimental

FSW = 0.3865

Class A:

mitochondrion

Class B:

vacuole

unclear

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V) AMIDASE/ BINDING / CARBON-NITROGEN LIGASE WITH GLUTAMINE AS AMIDO-N-DONOR
AT2G19080

Experimental

FSW = 0.4274

Class A:

mitochondrion

Class B:

vacuole

unclear

METAXIN-RELATED
AT3G54660

Experimental

two hybrid

FSW = 0.1589

Class A:

mitochondrion

Class B:

vacuole

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE
AT4G10920

Experimental

FSW = 0.0120

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G27390

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3036

Class C:

mitochondrion

TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ METAL ION BINDING
AT3G27070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1113

Class C:

mitochondrion

TOM20-1 (TRANSLOCASE OUTER MEMBRANE 20-1) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454