Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G40950 - ( RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) structural constituent of ribosome )
23 Proteins interacs with AT5G40950Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G03920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0219
| Class C:plastid | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G63490 | PredictedAffinity Capture-MS | FSW = 0.2516
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT4G01310 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4045
| Class C:plastid | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT1G78630 | PredictedAffinity Capture-MS | FSW = 0.2538
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G05190 | PredictedAffinity Capture-MS | FSW = 0.2881
| Class C:plastid | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0672
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3404
| Class C:plastid | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0018
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT3G17465 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4685
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31460 | PredictedAffinity Capture-MS | FSW = 0.5319
| Unknown | RIBOSOMAL PROTEIN L28 FAMILY PROTEIN |
AT3G03600 | PredictedAffinity Capture-MS | FSW = 0.0841
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G17460 | Predictedtwo hybrid | FSW = 0.0684
| Unknown | HAT1 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G14620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6252
| Unknown | DECOY (DECOY) |
AT1G07830 | PredictedAffinity Capture-MS | FSW = 0.5629
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
AT1G60170 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0466
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT3G60240 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0432
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G35490 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2463
| Unknown | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G46190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0486
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT5G64650 | PredictedAffinity Capture-MS | FSW = 0.2573
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
AT5G64670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2388
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT5G04430 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0788
| Unknown | BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING |
AT2G28820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2500
| Unknown | BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454