Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41060 - ( zinc finger (DHHC type) family protein )
16 Proteins interacs with AT5G41060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0391
| Class C:plasma membrane | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G50310 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0367
| Class C:plasma membrane | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G04940 | Predictedtwo hybrid | FSW = 0.0383
| Unknown | SCRAMBLASE-RELATED |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0296
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT3G19170 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0329
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT1G56410 | Predictedsynthetic growth defect | FSW = 0.1693
| Unknown | ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2) ATP BINDING |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0332
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT2G19220 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | UNKNOWN PROTEIN |
AT2G24050 | PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G32960 | PredictedSynthetic Lethality | FSW = 0.3000
| Unknown | TYROSINE SPECIFIC PROTEIN PHOSPHATASE FAMILY PROTEIN |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G44065 | PredictedSynthetic Lethality | FSW = 0.0419
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
AT5G14060 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454