Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41210 - ( ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1) glutathione transferase )

7 Proteins interacs with AT5G41210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G30870

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1469

Class C:

peroxisome

GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE
AT2G30860

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1309

Unknown

ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE
AT3G52150

Predicted

two hybrid

FSW = 0.0245

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G17020

Predicted

two hybrid

FSW = 0.0306

Unknown

TRANSCRIPTION FACTOR-RELATED
AT1G24310

Predicted

two hybrid

FSW = 0.0224

Unknown

UNKNOWN PROTEIN
AT4G29720

Predicted

two hybrid

FSW = 0.0800

Unknown

ATPAO5 (POLYAMINE OXIDASE 5) AMINE OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE
AT1G02950

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.0618

Unknown

ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4) GLUTATHIONE TRANSFERASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454