Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41360 - ( XPB2 ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding )
21 Proteins interacs with AT5G41360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G12250 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Class C:nucleus | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G41370 | PredictedShared biological functionGene neighbors methodPhylogenetic profile method | FSW = 0.4344
| Class C:nucleus | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT4G17020 | Predictedin vivoin vitroCo-purificationCo-purificationAffinity Capture-MStwo hybrid | FSW = 0.3667
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT1G06960 | Predictedtwo hybrid | FSW = 0.0137
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G55750 | Predictedin vivoin vivoin vivoin vivoin vitroin vitroin vitroin vitroCo-purification | FSW = 0.3156
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT4G20340 | Predictedin vitroin vivoin vivoin vitro | FSW = 0.1764
| Class C:nucleus | RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G03280 | Predictedin vivoin vitroin vitroin vivo | FSW = 0.1001
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G18040 | PredictedPhenotypic EnhancementCo-purification | FSW = 0.1582
| Class C:nucleus | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G03190 | Predictedin vivoCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationReconstituted ComplexSynthetic Lethality | FSW = 0.1740
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G18340 | Predictedin vivoin vitroCo-purificationtwo hybrid | FSW = 0.3906
| Class C:nucleus | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT1G05055 | PredictedAffinity Capture-MSCo-purificationin vivoin vitro | FSW = 0.3188
| Class C:nucleus | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT5G16630 | Predictedin vivoin vitro | FSW = 0.0456
| Unknown | RAD4 DAMAGED DNA BINDING |
AT5G19990 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0214
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT3G18524 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0695
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT1G16190 | PredictedReconstituted Complex | FSW = 0.0866
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G28030 | PredictedCo-purificationReconstituted Complex | FSW = 0.1733
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT1G12400 | PredictedCo-purificationAffinity Capture-Westernin vitro | FSW = 0.5682
| Unknown | DNA BINDING |
AT4G20330 | Predictedin vitro | FSW = 0.1353
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT5G27620 | Predictedin vivoin vitroAffinity Capture-MSCo-purification | FSW = 0.1667
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G12270 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0424
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454