Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41770 - ( crooked neck protein putative / cell cycle protein putative )
78 Proteins interacs with AT5G41770| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G18165
   | Experimental | FSW = 0.1749
| Unknown | MOS4 (MODIFIER OF SNC14) |
| AT3G56190
| Predictedinteraction prediction | FSW = 0.0039
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT1G04270
| Predictedtwo hybridtwo hybrid | FSW = 0.0274
| Unknown | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G02840
| PredictedAffinity Capture-MS | FSW = 0.2649
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT2G33730
| PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G20960
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3954
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G27540
| Predictedtwo hybrid | FSW = 0.0514
| Unknown | MIRO1 (MIRO-RELATED GTP-ASE 1) GTP BINDING |
| AT1G09760
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3057
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT1G09770
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3824
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G64270
| PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2226
| Unknown | SPLICING FACTOR PUTATIVE |
| AT1G80070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3717
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G55200 | Predictedinteraction prediction | FSW = 0.2964
| Unknown | SPLICING FACTOR PUTATIVE |
| AT2G33340
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defecttwo hybridCo-purificationinteraction predictionCo-expression | FSW = 0.2871
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G18790
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complexinteraction predictionCo-expression | FSW = 0.1710
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
| AT2G04390
| PredictedSynthetic Lethality | FSW = 0.0148
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
| AT4G11600
| Predictedinteraction predictiontwo hybrid | FSW = 0.0282
| Unknown | ATGPX6 (GLUTATHIONE PEROXIDASE 6) GLUTATHIONE PEROXIDASE |
| AT4G12770
| Predictedtwo hybrid | FSW = 0.0180
| Unknown | HEAT SHOCK PROTEIN BINDING |
| AT1G09640
| Predictedtwo hybrid | FSW = 0.0068
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT1G57720
| Predictedtwo hybridtwo hybrid | FSW = 0.0203
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT5G56290
| Predictedtwo hybridtwo hybrid | FSW = 0.0195
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
| AT2G35690
| Predictedtwo hybridtwo hybrid | FSW = 0.0323
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT4G16760
| Predictedtwo hybrid | FSW = 0.0543
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
| AT2G47640
| PredictedAffinity Capture-MS | FSW = 0.1893
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G19840
| PredictedReconstituted Complextwo hybrid | FSW = 0.1739
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
| AT2G43810
| PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT2G03870
| PredictedAffinity Capture-MS | FSW = 0.0593
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-MS | FSW = 0.2728
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT2G23930
| PredictedAffinity Capture-MS | FSW = 0.3051
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT3G11500
| Predictedinteraction predictionCo-expression | FSW = 0.2450
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
| AT1G77180
| Predictedtwo hybridtwo hybrid | FSW = 0.0257
| Unknown | CHROMATIN PROTEIN FAMILY |
| AT1G20580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3664
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT3G62310
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0811
| Unknown | RNA HELICASE PUTATIVE |
| AT2G29570
| Predictedtwo hybrid | FSW = 0.0155
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
| AT1G03330
| PredictedAffinity Capture-MS | FSW = 0.1050
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT1G76860
| PredictedAffinity Capture-MS | FSW = 0.1319
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30330
| PredictedAffinity Capture-MS | FSW = 0.3096
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT5G48870
| PredictedAffinity Capture-MS | FSW = 0.1166
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT3G26560
| Predictedtwo hybridsynthetic growth defectAffinity Capture-MStwo hybridinteraction predictionCo-expression | FSW = 0.1729
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
| AT4G15900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2038
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G02150
| Predictedtwo hybridCo-expression | FSW = 0.0595
| Unknown | MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER |
| AT2G37560
| PredictedAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.0109
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
| AT5G43640
| Predictedtwo hybrid | FSW = 0.0272
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15E) |
| AT1G09270
| Predictedtwo hybrid | FSW = 0.0131
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
| AT1G15200
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0350
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
| AT2G12550
| Predictedtwo hybridtwo hybrid | FSW = 0.0094
| Unknown | UBIQUITIN-ASSOCIATED (UBA)/TS-N DOMAIN-CONTAINING PROTEIN |
| AT3G63150
| Predictedtwo hybridtwo hybrid | FSW = 0.0198
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
| AT4G01270
| Predictedtwo hybrid | FSW = 0.0367
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G19000
| Predictedtwo hybrid | FSW = 0.0350
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
| AT1G03910
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0361
| Unknown | EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK) |
| AT1G16590
| Predictedtwo hybrid | FSW = 0.0814
| Unknown | REV7 DNA BINDING |
| AT1G26830
| Predictedtwo hybridtwo hybrid | FSW = 0.0122
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G31870
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0406
| Unknown | UNKNOWN PROTEIN |
| AT1G53710
| Predictedtwo hybridtwo hybrid | FSW = 0.0372
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT3G05070
| Predictedtwo hybridtwo hybrid | FSW = 0.0165
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MRNA SPLICING FACTOR CWF18 (INTERPROIPR013169) HAS 221 BLAST HITS TO 221 PROTEINS IN 113 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 107 FUNGI - 54 PLANTS - 17 VIRUSES - 9 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
| AT3G20860
| Predictedtwo hybridtwo hybrid | FSW = 0.0165
| Unknown | ATNEK5 (NIMA-RELATED KINASE5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G06160
| Predictedtwo hybridtwo hybridAffinity Capture-MSCo-expression | FSW = 0.2530
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G28290
| Predictedtwo hybrid | FSW = 0.0141
| Unknown | ATNEK3 (NIMA-RELATED KINASE3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G42190
| Predictedtwo hybridtwo hybrid | FSW = 0.0064
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G47240
| Predictedtwo hybridtwo hybrid | FSW = 0.0458
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
| AT5G47650
| Predictedtwo hybrid | FSW = 0.0584
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
| AT5G49310
| Predictedtwo hybrid | FSW = 0.0238
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
| AT1G07170
| Predictedsynthetic growth defect | FSW = 0.1036
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
| AT1G10580
| PredictedSynthetic Lethalitysynthetic growth defectSynthetic LethalityAffinity Capture-MSinteraction prediction | FSW = 0.1739
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G17070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2540
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
| AT1G65660
| PredictedAffinity Capture-MS | FSW = 0.1124
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
| AT3G55220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3618
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G21660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.2730
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT4G24490
| Predictedinterologs mapping | FSW = 0.0488
| Unknown | PROTEIN PRENYLTRANSFERASE |
| AT5G13010
| Predictedsynthetic growth defect | FSW = 0.0519
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G16260
| PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G28740
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3049
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
| AT1G14640
| PredictedAffinity Capture-MS | FSW = 0.2190
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G17130
| PredictedAffinity Capture-MSAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.1382
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
| AT1G80930
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2409
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
| AT4G21110
| PredictedAffinity Capture-MS | FSW = 0.1630
| Unknown | G10 FAMILY PROTEIN |
| AT2G39760
| Predictedtwo hybrid | FSW = 0.0350
| Unknown | BPM3 PROTEIN BINDING |
| AT5G45990
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0439
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT3G13210
| PredictedPhylogenetic profile method | FSW = 0.1924
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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