Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41790 - ( CIP1 (COP1-INTERACTIVE PROTEIN 1) protein binding )

50 Proteins interacs with AT5G41790
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G32950

Experimental

Reconstituted Complex

in vitro

far western blotting

FSW = 0.0060

Class B:

vacuole

plastid

nucleus

cytosol

Class D:

nucleus (p = 0.78)

 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G39940

Experimental

two hybrid

FSW = 0.0112

Unknown

 COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G62980

Experimental

two hybrid

FSW = 0.0137

Unknown

 TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G19640

Predicted

in vitro

FSW = 0.0203

Class C:

vacuole

 ARA7 GTP BINDING
AT1G02130

Predicted

Affinity Capture-Western

interologs mapping

Synthetic Lethality

FSW = 0.0374

Class C:

vacuole

 ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G73430

Predicted

interologs mapping

interaction prediction

FSW = 0.0972

Class C:

vacuole

 SEC34-LIKE FAMILY PROTEIN
AT5G45130

Predicted

two hybrid

in vivo

in vivo

two hybrid

FSW = 0.0269

Class C:

vacuole

 RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G48850

Predicted

pull down

FSW = 0.0137

Class C:

plastid

 EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE
AT2G33800

Predicted

pull down

FSW = 0.2149

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT5G59690Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0052

Class C:

plastid

 HISTONE H4
AT1G48350

Predicted

pull down

FSW = 0.0893

Class C:

plastid

 RIBOSOMAL PROTEIN L18 FAMILY PROTEIN
AT3G13120

Predicted

pull down

FSW = 0.0704

Class C:

plastid

 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT3G27850

Predicted

pull down

FSW = 0.0253

Class C:

plastid

 RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G22360

Predicted

pull down

FSW = 0.0834

Class C:

plastid

 DNAJ HEAT SHOCK FAMILY PROTEIN
AT4G34620

Predicted

pull down

FSW = 0.1593

Class C:

plastid

 SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02260

Predicted

pull down

FSW = 0.4083

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
AT3G44890

Predicted

pull down

FSW = 0.0483

Class C:

plastid

 RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G78630

Predicted

pull down

FSW = 0.1288

Class C:

plastid

 EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G33450

Predicted

pull down

FSW = 0.0496

Class C:

plastid

 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28)
AT2G43030

Predicted

pull down

FSW = 0.0438

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT1G21440

Predicted

pull down

FSW = 0.0377

Class C:

plastid

 MUTASE FAMILY PROTEIN
ATCG00160Predicted

pull down

FSW = 0.0743

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00800Predicted

pull down

FSW = 0.1288

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00810Predicted

pull down

FSW = 0.0761

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

pull down

FSW = 0.1203

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

pull down

FSW = 0.1243

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT5G58060

Predicted

interologs mapping

FSW = 0.0549

Unknown

 YKT61
AT1G11890

Predicted

interologs mapping

interologs mapping

FSW = 0.0308

Unknown

 SEC22 TRANSPORTER
AT1G12920

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0108

Unknown

 ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR
AT5G03860

Predicted

pull down

FSW = 0.0189

Unknown

 MLS (MALATE SYNTHASE) MALATE SYNTHASE
AT3G09210

Predicted

pull down

FSW = 0.2741

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT4G02930

Predicted

pull down

FSW = 0.0398

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT1G65290

Predicted

pull down

FSW = 0.0743

Unknown

 MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING
AT1G67630

Predicted

interaction prediction

FSW = 0.0121

Unknown

 POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G32380

Predicted

pull down

FSW = 0.0075

Unknown

 RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2)
AT2G20060

Predicted

pull down

FSW = 0.1626

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G49080

Predicted

pull down

FSW = 0.0979

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT3G44600

Predicted

pull down

FSW = 0.0189

Unknown

 CYP71 (CYCLOPHILIN71) CHROMATIN BINDING / HISTONE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G14140

Predicted

pull down

FSW = 0.2348

Unknown

 DMT2 (DNA METHYLTRANSFERASE 2) DNA (CYTOSINE-5-)-METHYLTRANSFERASE/ DNA BINDING / PROTEIN BINDING
AT4G37990

Predicted

pull down

FSW = 0.0417

Unknown

 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE
AT5G23230

Predicted

pull down

FSW = 0.0168

Unknown

 NIC2 (NICOTINAMIDASE 2) CATALYTIC/ NICOTINAMIDASE
AT5G51970

Predicted

pull down

FSW = 0.0203

Unknown

 SORBITOL DEHYDROGENASE PUTATIVE / L-IDITOL 2-DEHYDROGENASE PUTATIVE
AT5G64650

Predicted

pull down

FSW = 0.1488

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT5G16270

Predicted

in vivo

FSW = 0.0097

Unknown

 SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)
AT5G45600

Predicted

two hybrid

two hybrid

Reconstituted Complex

FSW = 0.0255

Unknown

 GAS41 PROTEIN BINDING
AT2G17980

Predicted

interologs mapping

interologs mapping

Synthetic Lethality

FSW = 0.0889

Unknown

 ATSLY1 PROTEIN TRANSPORTER
AT2G38130

Predicted

synthetic growth defect

FSW = 0.0476

Unknown

 ATMAK3 N-ACETYLTRANSFERASE
AT2G36300

Predicted

Synthetic Lethality

FSW = 0.0451

Unknown

 INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0304

Unknown

 ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT1G51160

Predicted

interaction prediction

FSW = 0.0684

Unknown

 SYNBINDIN PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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