Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G42020 - ( BIP2 ATP binding )

23 Proteins interacs with AT5G42020
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G19050

Experimental

two hybrid

FSW = 0.0308

Class A:

nucleus

Class B:

vacuole

plasma membrane

endoplasmic reticulum

ARR7 (RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G62390

Experimental

protein complementation assay

FSW = 0.0298

Unknown

ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7) CALMODULIN BINDING
AT5G02500

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.0466

Class C:

vacuole

plasma membrane

nucleus

HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT5G28540

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3054

Class C:

vacuole

plasma membrane

nucleus

BIP1 ATP BINDING
AT5G45420

Predicted

in vitro

FSW = 0.0083

Class C:

plasma membrane

nucleus

endoplasmic reticulum

MYB FAMILY TRANSCRIPTION FACTOR
AT5G10290

Predicted

Gene fusion method

FSW = 0.0683

Class C:

plasma membrane

LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN
AT5G24360

Predicted

Reconstituted Complex

FSW = 0.0889

Class C:

nucleus

endoplasmic reticulum

IRE1-1 (INOSITOL REQUIRING 1-1) ATP BINDING / ENDORIBONUCLEASE PRODUCING 5-PHOSPHOMONOESTERS / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G19840

Predicted

Affinity Capture-MS

FSW = 0.0676

Class C:

nucleus

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT1G26560

Predicted

in vivo

FSW = 0.0457

Unknown

BGLU40 (BETA GLUCOSIDASE 40) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G49910

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.0769

Unknown

CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G56410

Predicted

Phylogenetic profile method

FSW = 0.0784

Unknown

ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2) ATP BINDING
AT1G05200

Predicted

in vivo

FSW = 0.0879

Unknown

ATGLR34 INTRACELLULAR LIGAND-GATED ION CHANNEL
AT5G11210

Predicted

in vivo

FSW = 0.0473

Unknown

ATGLR25 INTRACELLULAR LIGAND-GATED ION CHANNEL
AT2G32730

Predicted

two hybrid

FSW = 0.0114

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0046

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT3G11870

Predicted

Reconstituted Complex

FSW = 0.1231

Unknown

PROTEIN KINASE-RELATED
AT5G24550

Predicted

in vivo

FSW = 0.0272

Unknown

BGLU32 (BETA GLUCOSIDASE 32) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT3G51980

Predicted

in vitro

two hybrid

FSW = 0.2222

Unknown

BINDING
AT5G62030

Predicted

two hybrid

FSW = 0.0293

Unknown

DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN
AT1G09080

Predicted

Phylogenetic profile method

FSW = 0.0392

Unknown

BIP3 ATP BINDING
AT2G32120

Predicted

Phylogenetic profile method

FSW = 0.0306

Unknown

HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2) ATP BINDING
AT2G02750

Predicted

Gene fusion method

FSW = 0.0702

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G71770

Predicted

Gene fusion method

FSW = 0.0381

Unknown

PAB5 (POLY(A)-BINDING PROTEIN 5) RNA BINDING / POLY(A) BINDING / TRANSLATION INITIATION FACTOR

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454