Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G42080 - ( ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) GTP binding / GTPase/ protein binding )

16 Proteins interacs with AT5G42080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G13300

Experimental

two hybrid

pull down

confocal microscopy

Reconstituted Complex

FSW = 0.0248

Class A:

plasma membrane

Class B:

vacuole

plastid

golgi

cytosol

cytoskeleton

cell plate

Class D:

nucleus (p = 0.78)

 SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING
AT3G18165

Experimental

FSW = 0.0563

Class B:

vacuole

unclear

plastid

plasma membrane

nucleus

cytosol

cytoskeleton

cell plate

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 MOS4 (MODIFIER OF SNC14)
AT5G35750

Experimental

pull down

two hybrid

FSW = 0.0162

Unknown

 AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G59610

Experimental

two hybrid

FSW = 0.0381

Unknown

 ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3) GTPASE
AT3G60190

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1442

Class C:

vacuole

plasma membrane

cell plate

 ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E) GTP BINDING / GTPASE
AT4G04910

Predicted

Phenotypic Suppression

FSW = 0.0112

Class C:

vacuole

 NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G63310

Predicted

Phenotypic Enhancement

FSW = 0.0281

Class C:

plastid

 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING
AT3G48750

Predicted

in vivo

in vitro

FSW = 0.0037

Class C:

plasma membrane

cytosol

 CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G21630

Predicted

in vitro

in vivo

in vivo

in vitro

FSW = 0.0383

Class C:

plasma membrane

 CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT5G02490

Predicted

Phenotypic Enhancement

FSW = 0.0088

Class C:

plasma membrane

 HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT3G61760

Predicted

Gene fusion method

Co-expression

FSW = 0.0368

Class C:

cell plate

 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) GTP BINDING / GTPASE
AT2G44590

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0832

Class C:

cell plate

 ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D) GTP BINDING / GTPASE
AT3G18130

Predicted

in vitro

two hybrid

FSW = 0.0105

Unknown

 RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT4G12290

Predicted

in vivo

in vitro

FSW = 0.1684

Unknown

 AMINE OXIDASE/ COPPER ION BINDING / QUINONE BINDING
AT4G18060

Predicted

two hybrid

in vitro

in vitro

in vivo

in vitro

in vivo

two hybrid

FSW = 0.0702

Unknown

 CLATHRIN BINDING
AT4G32820

Predicted

in vivo

FSW = 0.0936

Unknown

 BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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