Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G42740 - ( glucose-6-phosphate isomerase cytosolic (PGIC) )
15 Proteins interacs with AT5G42740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0560
| Class C:plasma membranecytosol | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT1G12360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0627
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
AT4G12120 | Predictedinteraction prediction | FSW = 0.2462
| Class C:plasma membrane | SEC1B PROTEIN TRANSPORTER |
AT2G21410 | PredictedAffinity Capture-MS | FSW = 0.0329
| Unknown | VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE |
AT1G18070 | PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT1G22450 | Predictedtwo hybridtwo hybrid | FSW = 0.0684
| Unknown | COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE |
AT5G19130 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | GPI TRANSAMIDASE COMPONENT FAMILY PROTEIN / GAA1-LIKE FAMILY PROTEIN |
AT5G03730 | Predictedtwo hybridtwo hybrid | FSW = 0.0103
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G57815 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT3G24030 | Predictedpull down | FSW = 0.0556
| Unknown | HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN |
AT1G23900 | PredictedAffinity Capture-MS | FSW = 0.0468
| Unknown | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G45000 | PredictedPhenotypic Suppression | FSW = 0.0512
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G02010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0941
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT3G60240 | Predictedtwo hybrid | FSW = 0.0083
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454