Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G42790 - ( PAF1 endopeptidase/ peptidase/ threonine-type endopeptidase )
50 Proteins interacs with AT5G42790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.3314
| Class D:mitochondrion (p = 0.82)cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G72730 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0100
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G53850 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4653
| Class C:plasma membrane | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G60820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4732
| Class C:plasma membrane | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53750 | PredictedAffinity Capture-MS | FSW = 0.2347
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2131
| Class C:plasma membrane | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G47250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6403
| Class C:plasma membrane | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.3633
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.3762
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G21720 | PredictedAffinity Capture-MS | FSW = 0.3496
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5581
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G66140 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3769
| Unknown | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridtwo hybridin vitroAffinity Capture-MSinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.5513
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSinteraction predictionGene neighbors methodPhylogenetic profile method | FSW = 0.5925
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.1470
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3831
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5036
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G20630 | Predictedinteraction prediction | FSW = 0.0159
| Unknown | CAT1 (CATALASE 1) CATALASE |
AT1G80030 | PredictedSynthetic Lethality | FSW = 0.0058
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G05530 | PredictedAffinity Capture-MS | FSW = 0.3844
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT1G55900 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | TIM50 |
AT1G16470 | Predictedtwo hybridin vivoin vitroPhylogenetic profile methodCo-expression | FSW = 0.5121
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedPhylogenetic profile method | FSW = 0.3182
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G13060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3500
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2931
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G61700 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.2579
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G72340 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT3G59970 | Predictedtwo hybrid | FSW = 0.0970
| Unknown | MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1) METHYLENETETRAHYDROFOLATE REDUCTASE (NADPH) |
AT5G12410 | Predictedtwo hybrid | FSW = 0.0775
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT5G42040 | Predictedtwo hybrid | FSW = 0.1164
| Unknown | RPN12B (REGULATORY PARTICLE NON-ATPASE 12B) PEPTIDASE |
AT5G27620 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G44635 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.1083
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3274
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT5G11200 | Predictedtwo hybridinteraction prediction | FSW = 0.0175
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G40580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4048
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1528
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G56450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4278
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionCo-expression | FSW = 0.2748
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.3462
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G32730 | PredictedAffinity Capture-MS | FSW = 0.3584
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G13330 | PredictedAffinity Capture-MS | FSW = 0.2311
| Unknown | BINDING |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3714
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G29040 | PredictedAffinity Capture-MS | FSW = 0.3274
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1718
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3817
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0358
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G23540 | PredictedAffinity Capture-MS | FSW = 0.2611
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G43010 | PredictedAffinity Capture-MS | FSW = 0.3551
| Unknown | RPT4A ATPASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454