Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G42970 - ( COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) protein binding )
36 Proteins interacs with AT5G42970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15850 | Experimentalaffinity technologyAffinity Capture-Western | FSW = 0.1937
| Class D:plastid (p = 0.78) | COL1 (CONSTANS-LIKE 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G64280 | Experimental | FSW = 0.0822
| Unknown | NPR1 (NONEXPRESSER OF PR GENES 1) PROTEIN BINDING / TRANSCRIPTION ACTIVATOR |
AT5G56280 | ExperimentalAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.3062
| Class D:plastid (p = 0.78)cytosol (p = 0.67) | CSN6A |
AT4G02570 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0834
| Class D:plastid (p = 0.78)cytosol (p = 0.67) | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT1G30950 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.2012
| Class D:plastid (p = 0.78) | UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G13550 | Experimentaltwo hybrid | FSW = 0.1115
| Class D:plastid (p = 0.78) | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G14250 | Experimentaltwo hybridAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.4438
| Class D:cytosol (p = 0.67) | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT3G61140 | Experimentalmolecular sievingtwo hybrid | FSW = 0.4555
| Class D:cytosol (p = 0.67) | FUS6 (FUSCA 6) |
AT4G14110 | Experimentaltwo hybridmolecular sieving | FSW = 0.5124
| Class D:cytosol (p = 0.67) | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING |
AT2G26990 | Experimentalco-fractionationCo-fractionationAffinity Capture-Westerntwo hybrid | FSW = 0.3601
| Class D:cytosol (p = 0.67) | FUS12 (FUSCA 12) |
AT1G02090 | Experimentaltwo hybridmolecular sievingmolecular sieving | FSW = 0.2709
| Class D:cytosol (p = 0.67) | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT1G71230 | ExperimentalAffinity Capture-WesternAffinity Capture-Westernaffinity technology | FSW = 0.3763
| Unknown | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT1G22920 | Experimentaltwo hybrid | FSW = 0.2966
| Unknown | CSN5A (COP9 SIGNALOSOME 5A) |
AT2G39940 | Experimental | FSW = 0.1080
| Unknown | COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G46210 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.2348
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G10840 | ExperimentalAffinity Capture-Western | FSW = 0.1937
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
AT1G26830 | Experimentaltwo hybrid | FSW = 0.0849
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G27240 | Predictedtwo hybridtwo hybrid | FSW = 0.0643
| Unknown | CYTOCHROME C1 PUTATIVE |
AT5G40810 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | CYTOCHROME C1 PUTATIVE |
AT4G19490 | Predictedtwo hybridtwo hybrid | FSW = 0.0228
| Unknown | PROTEIN BINDING |
AT1G75950 | PredictedSynthetic Lethality | FSW = 0.0272
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G17880 | Predictedtwo hybridtwo hybrid | FSW = 0.0152
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
AT3G27640 | PredictedAffinity Capture-MS | FSW = 0.1456
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G15840 | Predictedtwo hybrid | FSW = 0.0456
| Unknown | PROTEIN BINDING |
AT5G15610 | Predictedtwo hybrid | FSW = 0.0600
| Unknown | PROTEASOME FAMILY PROTEIN |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0193
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G15170 | Predictedtwo hybridtwo hybrid | FSW = 0.1026
| Unknown | TYROSYL-DNA PHOSPHODIESTERASE-RELATED |
AT5G26360 | Predictedtwo hybridtwo hybrid | FSW = 0.0093
| Unknown | CHAPERONIN PUTATIVE |
AT1G29150 | Predictedtwo hybridtwo hybrid | FSW = 0.0238
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT3G04240 | Predictedtwo hybridtwo hybrid | FSW = 0.0409
| Unknown | SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G12380 | Predictedtwo hybridtwo hybrid | FSW = 0.0241
| Unknown | ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G27530 | Predictedtwo hybridtwo hybrid | FSW = 0.0120
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT5G56580 | Predictedtwo hybrid | FSW = 0.0231
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.0985
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT3G02200 | Predictedtwo hybridCo-expression | FSW = 0.0822
| Unknown | PROTEASOME FAMILY PROTEIN |
AT2G29525 | Predictedtwo hybrid | FSW = 0.0684
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHATIDIC ACID PHOSPHATASE-RELATED / PAP2-RELATED (TAIRAT3G540201) HAS 352 BLAST HITS TO 352 PROTEINS IN 78 SPECIES ARCHAE - 0 BACTERIA - 4 METAZOA - 245 FUNGI - 0 PLANTS - 50 VIRUSES - 0 OTHER EUKARYOTES - 53 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454