Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43130 - ( TAF4 (TBP-ASSOCIATED FACTOR 4) transcription initiation factor )

16 Proteins interacs with AT5G43130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G58470

Experimental

two hybrid

FSW = 0.2722

Unknown

TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G17440

Experimental

two hybrid

FSW = 0.8346

Unknown

EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G02680

Experimental

two hybrid

FSW = 0.1482

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G31720

Experimental

two hybrid

FSW = 0.1678

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT5G25150

Experimental

two hybrid

FSW = 0.2992

Unknown

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT1G27720

Experimental

two hybrid

FSW = 0.5487

Unknown

TAF4B (TBP-ASSOCIATED FACTOR 4B) TRANSCRIPTION INITIATION FACTOR
AT4G20280

Experimental

two hybrid

FSW = 0.1701

Unknown

TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G55300

Experimental

two hybrid

FSW = 0.0871

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G18000

Experimental

two hybrid

FSW = 0.2469

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT5G45600

Experimental

two hybrid

FSW = 0.0817

Unknown

GAS41 PROTEIN BINDING
AT1G50300

Experimental

two hybrid

FSW = 0.3048

Unknown

TAF15 (TBP-ASSOCIATED FACTOR 15) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT4G34340

Experimental

two hybrid

FSW = 0.6648

Unknown

TAF8 (TBP-ASSOCIATED FACTOR 8) DNA BINDING
AT1G54140

Experimental

two hybrid

FSW = 0.1157

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G10070

Experimental

two hybrid

FSW = 0.1986

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G03730

Predicted

Phenotypic Suppression

FSW = 0.0098

Unknown

CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT3G19040

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1325

Unknown

HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454