Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43840 - ( AT-HSFA6A DNA binding / transcription factor )
14 Proteins interacs with AT5G43840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G01410 | PredictedSynthetic Rescue | FSW = 0.0192
| Class C:nucleus | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0178
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G51910 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0395
| Class C:nucleus | AT-HSFA7A DNA BINDING / TRANSCRIPTION FACTOR |
AT3G63350 | PredictedGene fusion methodCo-expression | FSW = 0.0443
| Class C:nucleus | AT-HSFA7B DNA BINDING / TRANSCRIPTION FACTOR |
AT4G36750 | Predictedtwo hybrid | FSW = 0.1988
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0119
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G11320 | Predictedtwo hybrid | FSW = 0.1220
| Unknown | UNKNOWN PROTEIN |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0505
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0704
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT3G54840 | Predictedtwo hybrid | FSW = 0.0394
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G05040 | Predictedtwo hybrid | FSW = 0.3712
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
AT4G14370 | Predictedtwo hybrid | FSW = 0.1345
| Unknown | PHOSPHOINOSITIDE BINDING |
AT4G19760 | Predictedtwo hybrid | FSW = 0.1345
| Unknown | CATALYTIC/ CATION BINDING / CHITINASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G19300 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454