Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G44320 - ( eukaryotic translation initiation factor 3 subunit 7 putative / eIF-3 zeta putative / eIF3d putative )

15 Proteins interacs with AT5G44320
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G27710

Predicted

two hybrid

Co-expression

FSW = 0.0143

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT5G25754Predicted

in vitro

FSW = 0.1818

Unknown

UNKNOWN PROTEIN
AT4G11420

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.1350

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT2G26230

Predicted

two hybrid

two hybrid

FSW = 0.1778

Unknown

URICASE / URATE OXIDASE / NODULIN 35 PUTATIVE
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0376

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G48970

Predicted

two hybrid

FSW = 0.0861

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G43460

Predicted

two hybrid

Co-expression

FSW = 0.0499

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38A)
AT3G27530

Predicted

two hybrid

FSW = 0.0253

Unknown

GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER
AT5G40040

Predicted

two hybrid

FSW = 0.0684

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E)
AT3G59540Predicted

two hybrid

FSW = 0.0131

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT5G65280

Predicted

two hybrid

FSW = 0.0443

Unknown

GCL1 (GCR2-LIKE 1) CATALYTIC
AT5G06000

Predicted

in vitro

in vivo

FSW = 0.2506

Unknown

EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G37475

Predicted

in vivo

FSW = 0.1722

Unknown

TRANSLATION INITIATION FACTOR-RELATED
AT5G54940

Predicted

Affinity Capture-MS

FSW = 0.0671

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G20980

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3551

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454