Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G44635 - ( minichromosome maintenance family protein / MCM family protein )

52 Proteins interacs with AT5G44635
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78900

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0045

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G29990

Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT1G65540

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0362

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G11070

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0416

Unknown

OUTER MEMBRANE OMP85 FAMILY PROTEIN
AT1G23740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2768

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT3G47370

Predicted

Affinity Capture-MS

FSW = 0.0077

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT4G23700

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3201

Unknown

ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT1G47250

Predicted

two hybrid

FSW = 0.0442

Unknown

PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0270

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT5G42790

Predicted

two hybrid

FSW = 0.0308

Unknown

PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G07180

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1540

Unknown

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT4G28220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3343

Unknown

NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE
AT1G44900

Predicted

two hybrid

two hybrid

Co-purification

Colocalization

co-fractionation

Co-fractionation

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

Affinity Capture-MS

Colocalization

Co-purification

co-fractionation

Co-fractionation

Affinity Capture-Western

in vitro

in vivo

FSW = 0.2170

Unknown

ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT5G45400

Predicted

two hybrid

FSW = 0.1017

Unknown

REPLICATION PROTEIN PUTATIVE
AT5G61000

Predicted

two hybrid

FSW = 0.0763

Unknown

REPLICATION PROTEIN PUTATIVE
AT4G02060

Predicted

in vivo

in vivo

in vivo

in vivo

in vivo

Co-purification

Co-purification

Reconstituted Complex

two hybrid

Reconstituted Complex

Co-purification

Synthetic Lethality

Affinity Capture-Western

in vitro

FSW = 0.2854

Unknown

PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G50060

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2926

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G50920

Predicted

interaction prediction

FSW = 0.0125

Unknown

GTP-BINDING PROTEIN-RELATED
AT2G37560

Predicted

two hybrid

FSW = 0.1445

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT2G01120

Predicted

two hybrid

FSW = 0.1633

Unknown

ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING
AT2G16440

Predicted

Co-purification

Colocalization

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Reconstituted Complex

Synthetic Lethality

in vitro

in vivo

FSW = 0.3670

Unknown

DNA REPLICATION LICENSING FACTOR PUTATIVE
AT2G20980

Predicted

two hybrid

two hybrid

two hybrid

in vivo

in vitro

two hybrid

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2606

Unknown

MCM10
AT3G09660

Predicted

Affinity Capture-Western

FSW = 0.1877

Unknown

MCM8 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G24010

Predicted

two hybrid

FSW = 0.0050

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G24630

Predicted

two hybrid

FSW = 0.0727

Unknown

UNKNOWN PROTEIN
AT3G25100

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

two hybrid

FSW = 0.1113

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT4G12620

Predicted

two hybrid

FSW = 0.1672

Unknown

ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT5G11300

Predicted

Affinity Capture-MS

FSW = 0.0068

Unknown

CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G43080

Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G54710

Predicted

in vitro

in vivo

two hybrid

FSW = 0.0208

Unknown

CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G46280

Predicted

Colocalization

Affinity Capture-MS

FSW = 0.1407

Unknown

DNA REPLICATION LICENSING FACTOR PUTATIVE
AT1G68310

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2161

Unknown

VACUOLAR SORTING SIGNAL BINDING
AT2G03040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0178

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G07690

Predicted

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.1862

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G31760

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2761

Unknown

ZINC FINGER PROTEIN-RELATED
AT3G08910

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1924

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G17630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0690

Unknown

ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT3G47120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0197

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G19006

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0194

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.0104

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G26320

Predicted

Synthetic Lethality

FSW = 0.0109

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G60860

Predicted

Affinity Capture-MS

FSW = 0.1631

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT3G61740

Predicted

Affinity Capture-MS

FSW = 0.0104

Unknown

SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G16970

Predicted

biochemical

biochemical

synthetic growth defect

FSW = 0.0977

Unknown

ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G22756

Predicted

Affinity Capture-MS

FSW = 0.1477

Unknown

SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT5G08420

Predicted

two hybrid

interaction prediction

FSW = 0.0030

Unknown

RNA BINDING
AT5G14520

Predicted

Co-purification

FSW = 0.0163

Unknown

PESCADILLO-RELATED
AT5G40580

Predicted

Affinity Capture-MS

FSW = 0.0387

Unknown

PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G49010

Predicted

Affinity Capture-MS

FSW = 0.1161

Unknown

SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)
AT5G56510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2521

Unknown

APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING
AT3G27430

Predicted

Affinity Capture-MS

FSW = 0.0468

Unknown

PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G22840

Predicted

interaction prediction

FSW = 0.0099

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454