Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G44635 - ( minichromosome maintenance family protein / MCM family protein )
52 Proteins interacs with AT5G44635Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0045
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G65540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0362
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G11070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0416
| Unknown | OUTER MEMBRANE OMP85 FAMILY PROTEIN |
AT1G23740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2768
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT4G23700 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3201
| Unknown | ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT1G47250 | Predictedtwo hybrid | FSW = 0.0442
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G33090 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT5G42790 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G07180 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1540
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT4G28220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3343
| Unknown | NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE |
AT1G44900 | Predictedtwo hybridtwo hybridCo-purificationColocalizationco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-MSColocalizationCo-purificationco-fractionationCo-fractionationAffinity Capture-Westernin vitroin vivo | FSW = 0.2170
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G45400 | Predictedtwo hybrid | FSW = 0.1017
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT5G61000 | Predictedtwo hybrid | FSW = 0.0763
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT4G02060 | Predictedin vivoin vivoin vivoin vivoin vivoCo-purificationCo-purificationReconstituted Complextwo hybridReconstituted ComplexCo-purificationSynthetic LethalityAffinity Capture-Westernin vitro | FSW = 0.2854
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G50060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2926
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G50920 | Predictedinteraction prediction | FSW = 0.0125
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT2G37560 | Predictedtwo hybrid | FSW = 0.1445
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT2G01120 | Predictedtwo hybrid | FSW = 0.1633
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G16440 | PredictedCo-purificationColocalizationReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted ComplexSynthetic Lethalityin vitroin vivo | FSW = 0.3670
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G20980 | Predictedtwo hybridtwo hybridtwo hybridin vivoin vitrotwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.2606
| Unknown | MCM10 |
AT3G09660 | PredictedAffinity Capture-Western | FSW = 0.1877
| Unknown | MCM8 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G24010 | Predictedtwo hybrid | FSW = 0.0050
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G24630 | Predictedtwo hybrid | FSW = 0.0727
| Unknown | UNKNOWN PROTEIN |
AT3G25100 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.1113
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT4G12620 | Predictedtwo hybrid | FSW = 0.1672
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G11300 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G43080 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G54710 | Predictedin vitroin vivotwo hybrid | FSW = 0.0208
| Unknown | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G46280 | PredictedColocalizationAffinity Capture-MS | FSW = 0.1407
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT1G68310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2161
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0178
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G07690 | PredictedAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.1862
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G31760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2761
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT3G08910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1924
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G17630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0690
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G47120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0197
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G19006 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0194
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0109
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G60860 | PredictedAffinity Capture-MS | FSW = 0.1631
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT3G61740 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G16970 | Predictedbiochemicalbiochemicalsynthetic growth defect | FSW = 0.0977
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.1477
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT5G08420 | Predictedtwo hybridinteraction prediction | FSW = 0.0030
| Unknown | RNA BINDING |
AT5G14520 | PredictedCo-purification | FSW = 0.0163
| Unknown | PESCADILLO-RELATED |
AT5G40580 | PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G49010 | PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT5G56510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2521
| Unknown | APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING |
AT3G27430 | PredictedAffinity Capture-MS | FSW = 0.0468
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G22840 | Predictedinteraction prediction | FSW = 0.0099
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454