Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G45020 - ( LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Glutathione S-transferase predicted (InterProIPR016639) Glutathione S-transferase C-terminal (InterProIPR004046) Glutathione S-transferase C-terminal-like (InterProIPR010987) Glutathione S-transferase/chloride channel C-terminal (InterProIPR017933) Thioredoxin-like fold (InterProIPR012336) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT4G198801) Has 1632 Blast hits to 1632 proteins in 489 species Archae - 12 Bacteria - 907 Metazoa - 22 Fungi - 156 Plants - 57 Viruses - 0 Other Eukaryotes - 478 (source NCBI BLink) )

20 Proteins interacs with AT5G45020
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G26590

Predicted

biochemical

FSW = 0.0327

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0232

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G21640

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0886

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT1G10070

Predicted

biochemical

FSW = 0.0384

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0021

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G70580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0382

Unknown

AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT2G38960

Predicted

biochemical

FSW = 0.0174

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT5G10330Predicted

interologs mapping

interologs mapping

FSW = 0.0427

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT1G10210

Predicted

biochemical

FSW = 0.0269

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.0245

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0214

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT2G47090

Predicted

Phenotypic Enhancement

FSW = 0.0409

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G06470

Predicted

biochemical

FSW = 0.0667

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G45630

Predicted

synthetic growth defect

FSW = 0.0221

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G14240

Predicted

biochemical

FSW = 0.0181

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT4G18593

Predicted

interologs mapping

FSW = 0.0750

Unknown

DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED
AT5G66640

Predicted

biochemical

FSW = 0.0158

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT5G44990

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1683

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN STEM CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 479 (SOURCE NCBI BLINK)
AT5G44000

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1142

Unknown

GLUTATHIONE S-TRANSFERASE C-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G19880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0909

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454