Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G45140 - ( NRPC2 DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding )
33 Proteins interacs with AT5G45140Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07790 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0735
| Unknown | HTB1 DNA BINDING |
AT2G17520 | Predictedbiochemical | FSW = 0.0049
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT4G07950 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridinteraction predictionEnriched domain pair | FSW = 0.2153
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT1G75230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0432
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT1G01210 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MStwo hybridEnriched domain pair | FSW = 0.0702
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT1G05120 | PredictedPhenotypic Enhancement | FSW = 0.0503
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT1G17980 | PredictedSynthetic Rescue | FSW = 0.0111
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT2G47620 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0460
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0264
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G13370 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0317
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0210
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT4G26840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0100
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G21710 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0999
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G61700 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2981
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT2G29540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.0864
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G03770 | Predictedtwo hybridtwo hybrid | FSW = 0.0494
| Unknown | RING1B (RING 1B) PROTEIN BINDING / ZINC ION BINDING |
AT5G44280 | Predictedtwo hybrid | FSW = 0.0494
| Unknown | RING1A (RING 1A) PROTEIN BINDING / ZINC ION BINDING |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1776
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.0398
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54250 | PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pair | FSW = 0.3141
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT1G60620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.1717
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G02820 | PredictedPhenotypic Enhancement | FSW = 0.0105
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1892
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G08880 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0162
| Unknown | H2AXA DNA BINDING |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0224
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13240 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Rescue | FSW = 0.2771
| Unknown | TRANSCRIPTION REGULATOR |
AT5G41010 | Predictedinterologs mappingEnriched domain pairCo-expression | FSW = 0.1166
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G60040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.4887
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
AT5G51940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2523
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G11475 | PredictedAffinity Capture-MSEnriched domain pair | FSW = 0.2501
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G04630 | PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.2689
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G19480 | PredictedAffinity Capture-MS | FSW = 0.0732
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT3G53650 | Predictedinteraction predictionCo-expression | FSW = 0.0570
| Unknown | HISTONE H2B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454