Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G45190 - ( cyclin family protein )
57 Proteins interacs with AT5G45190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic LethalityCo-crystal Structure | FSW = 0.0110
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT4G19640 | Predictedinterologs mapping | FSW = 0.0069
| Unknown | ARA7 GTP BINDING |
AT1G74910 | Predictedtwo hybridtwo hybrid | FSW = 0.0656
| Unknown | ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN |
AT3G56310 | Predictedtwo hybridtwo hybrid | FSW = 0.0978
| Unknown | ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE |
AT2G32080 | Predictedin vitro | FSW = 0.0296
| Unknown | PUR ALPHA-1 NUCLEIC ACID BINDING |
AT2G27290 | Predictedtwo hybrid | FSW = 0.1847
| Unknown | UNKNOWN PROTEIN |
AT1G74970 | Predictedtwo hybrid | FSW = 0.0222
| Unknown | RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G55200 | Predictedtwo hybridtwo hybrid | FSW = 0.1032
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G13120 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT4G35800 | Predictedin vitroin vitro | FSW = 0.0069
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G48750 | Predictedtwo hybridtwo hybridEnriched domain pairCo-expression | FSW = 0.0252
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G13300 | Predictedtwo hybrid | FSW = 0.1870
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT5G15680 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0794
| Unknown | BINDING |
AT3G17750 | Predictedtwo hybrid | FSW = 0.0344
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G28860 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G24490 | Predictedtwo hybrid | FSW = 0.0227
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.0838
| Unknown | REPLICATION PROTEIN-RELATED |
AT5G53180 | Predictedtwo hybrid | FSW = 0.1860
| Unknown | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G36010 | Predictedtwo hybridtwo hybrid | FSW = 0.1368
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G22220 | Predictedtwo hybrid | FSW = 0.1266
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G43190 | Predictedtwo hybridtwo hybrid | FSW = 0.0882
| Unknown | POLYPYRIMIDINE TRACT-BINDING PROTEIN PUTATIVE / HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE |
AT4G34390 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT4G02930 | Predictedtwo hybridtwo hybrid | FSW = 0.0033
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT5G08380 | Predictedtwo hybrid | FSW = 0.2110
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G03120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0128
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT3G08730 | Predictedtwo hybrid | FSW = 0.0432
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G14800 | Predictedtwo hybridtwo hybrid | FSW = 0.0095
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT5G59720 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT2G04650 | Predictedtwo hybrid | FSW = 0.0656
| Unknown | ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN |
AT2G44420 | Predictedtwo hybridtwo hybrid | FSW = 0.2262
| Unknown | PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE FAMILY PROTEIN |
AT2G47970 | Predictedtwo hybrid | FSW = 0.0479
| Unknown | NPL4 FAMILY PROTEIN |
AT3G24315 | Predictedtwo hybridtwo hybrid | FSW = 0.0381
| Unknown | ATSEC20 |
AT3G49080 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT3G55220 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G63000 | Predictedtwo hybridtwo hybrid | FSW = 0.2103
| Unknown | NPL41 (NPL4-LIKE PROTEIN 1) |
AT5G38630 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | ACYB-1 CARBON-MONOXIDE OXYGENASE |
AT1G05890 | Predictedtwo hybridtwo hybrid | FSW = 0.0296
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G53710 | Predictedtwo hybridtwo hybrid | FSW = 0.1590
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G76880 | Predictedtwo hybrid | FSW = 0.0667
| Unknown | TRIHELIX DNA-BINDING PROTEIN PUTATIVE |
AT1G77720 | Predictedtwo hybrid | FSW = 0.1075
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G79000 | Predictedtwo hybridtwo hybrid | FSW = 0.0882
| Unknown | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT2G01120 | Predictedtwo hybrid | FSW = 0.0776
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G27960 | Predictedtwo hybridtwo hybrid | FSW = 0.0817
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0582
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G12980 | Predictedtwo hybrid | FSW = 0.1252
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G19420 | Predictedtwo hybrid | FSW = 0.0825
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT3G54180 | Predictedtwo hybridin vitro | FSW = 0.0692
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT4G34370 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G55760 | Predictedtwo hybrid | FSW = 0.1686
| Unknown | SRT1 (SIRTUIN 1) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G61980 | Predictedtwo hybrid | FSW = 0.0865
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT5G64370 | Predictedtwo hybridtwo hybrid | FSW = 0.0157
| Unknown | BETA-UP (BETA-UREIDOPROPIONASE) BETA-UREIDOPROPIONASE |
AT3G12280 | Predictedin vitroin vivo | FSW = 0.0164
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G13700 | Predictedtwo hybrid | FSW = 0.0116
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT1G44180 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT4G19560 | PredictedPhylogenetic profile method | FSW = 0.0111
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454