Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G45190 - ( cyclin family protein )

57 Proteins interacs with AT5G45190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

Synthetic Lethality

Co-crystal Structure

FSW = 0.0110

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT4G19640

Predicted

interologs mapping

FSW = 0.0069

Unknown

ARA7 GTP BINDING
AT1G74910

Predicted

two hybrid

two hybrid

FSW = 0.0656

Unknown

ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN
AT3G56310

Predicted

two hybrid

two hybrid

FSW = 0.0978

Unknown

ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE
AT2G32080

Predicted

in vitro

FSW = 0.0296

Unknown

PUR ALPHA-1 NUCLEIC ACID BINDING
AT2G27290

Predicted

two hybrid

FSW = 0.1847

Unknown

UNKNOWN PROTEIN
AT1G74970

Predicted

two hybrid

FSW = 0.0222

Unknown

RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G55200Predicted

two hybrid

two hybrid

FSW = 0.1032

Unknown

SPLICING FACTOR PUTATIVE
AT5G13120

Predicted

two hybrid

FSW = 0.0133

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT4G35800

Predicted

in vitro

in vitro

FSW = 0.0069

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G48750

Predicted

two hybrid

two hybrid

Enriched domain pair

Co-expression

FSW = 0.0252

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G13300

Predicted

two hybrid

FSW = 0.1870

Unknown

SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING
AT5G15680

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0794

Unknown

BINDING
AT3G17750

Predicted

two hybrid

FSW = 0.0344

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G28860

Predicted

Affinity Capture-MS

FSW = 0.0088

Unknown

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G24490

Predicted

two hybrid

FSW = 0.0227

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G02920

Predicted

two hybrid

FSW = 0.0838

Unknown

REPLICATION PROTEIN-RELATED
AT5G53180

Predicted

two hybrid

FSW = 0.1860

Unknown

PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G36010

Predicted

two hybrid

two hybrid

FSW = 0.1368

Unknown

E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G22220

Predicted

two hybrid

FSW = 0.1266

Unknown

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G43190

Predicted

two hybrid

two hybrid

FSW = 0.0882

Unknown

POLYPYRIMIDINE TRACT-BINDING PROTEIN PUTATIVE / HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE
AT4G34390

Predicted

two hybrid

FSW = 0.0184

Unknown

XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT4G02930

Predicted

two hybrid

two hybrid

FSW = 0.0033

Unknown

ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT5G08380

Predicted

two hybrid

FSW = 0.2110

Unknown

ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT2G03120

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0128

Unknown

ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT3G08730

Predicted

two hybrid

FSW = 0.0432

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G14800

Predicted

two hybrid

two hybrid

FSW = 0.0095

Unknown

P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT5G59720

Predicted

two hybrid

FSW = 0.0127

Unknown

HSP182 (HEAT SHOCK PROTEIN 182)
AT2G04650

Predicted

two hybrid

FSW = 0.0656

Unknown

ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN
AT2G44420

Predicted

two hybrid

two hybrid

FSW = 0.2262

Unknown

PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE FAMILY PROTEIN
AT2G47970

Predicted

two hybrid

FSW = 0.0479

Unknown

NPL4 FAMILY PROTEIN
AT3G24315

Predicted

two hybrid

two hybrid

FSW = 0.0381

Unknown

ATSEC20
AT3G49080

Predicted

two hybrid

FSW = 0.0098

Unknown

RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT3G55220

Predicted

two hybrid

FSW = 0.0274

Unknown

SPLICING FACTOR PUTATIVE
AT3G63000

Predicted

two hybrid

two hybrid

FSW = 0.2103

Unknown

NPL41 (NPL4-LIKE PROTEIN 1)
AT5G38630

Predicted

two hybrid

FSW = 0.0444

Unknown

ACYB-1 CARBON-MONOXIDE OXYGENASE
AT1G05890

Predicted

two hybrid

two hybrid

FSW = 0.0296

Unknown

ZINC FINGER PROTEIN-RELATED
AT1G53710

Predicted

two hybrid

two hybrid

FSW = 0.1590

Unknown

HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G76880

Predicted

two hybrid

FSW = 0.0667

Unknown

TRIHELIX DNA-BINDING PROTEIN PUTATIVE
AT1G77720

Predicted

two hybrid

FSW = 0.1075

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G79000

Predicted

two hybrid

two hybrid

FSW = 0.0882

Unknown

HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT2G01120

Predicted

two hybrid

FSW = 0.0776

Unknown

ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING
AT2G27960

Predicted

two hybrid

two hybrid

FSW = 0.0817

Unknown

CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING
AT2G27970

Predicted

two hybrid

FSW = 0.0582

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G12980

Predicted

two hybrid

FSW = 0.1252

Unknown

HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G19420

Predicted

two hybrid

FSW = 0.0825

Unknown

ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE
AT3G54180

Predicted

two hybrid

in vitro

FSW = 0.0692

Unknown

CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT4G34370

Predicted

two hybrid

FSW = 0.0148

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT5G55760

Predicted

two hybrid

FSW = 0.1686

Unknown

SRT1 (SIRTUIN 1) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G61980

Predicted

two hybrid

FSW = 0.0865

Unknown

AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING
AT5G64370

Predicted

two hybrid

two hybrid

FSW = 0.0157

Unknown

BETA-UP (BETA-UREIDOPROPIONASE) BETA-UREIDOPROPIONASE
AT3G12280

Predicted

in vitro

in vivo

FSW = 0.0164

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT3G13700

Predicted

two hybrid

FSW = 0.0116

Unknown

RNA-BINDING PROTEIN PUTATIVE
AT1G44180

Predicted

Affinity Capture-MS

FSW = 0.0095

Unknown

AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0090

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT5G16040

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT4G19560

Predicted

Phylogenetic profile method

FSW = 0.0111

Unknown

CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454