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AT5G45750 - ( AtRABA1c (Arabidopsis Rab GTPase homolog A1c) GTP binding )

41 Proteins interacs with AT5G45750

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G17530	Predicted Phylogenetic profile method Co-expression	FSW = 0.8837	Class C: vacuole plasma membrane nucleus	ATRAB1C GTP BINDING
AT4G19640	Predicted Phylogenetic profile method Co-expression	FSW = 0.2139	Class C: vacuole plasma membrane	ARA7 GTP BINDING
AT1G02130	Predicted Phylogenetic profile method Co-expression	FSW = 0.5274	Class C: vacuole plasma membrane	ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT3G46060	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.8734	Class C: vacuole plasma membrane	ATRAB8A GTP BINDING
AT4G17170	Predicted Phylogenetic profile method	FSW = 0.7744	Class C: vacuole plasma membrane	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT1G16920	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6665	Class C: vacuole plasma membrane	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT2G44610	Predicted Phylogenetic profile method	FSW = 0.3328	Class C: vacuole plasma membrane	RAB6A GTP BINDING / PROTEIN BINDING
AT5G47520	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.8521	Class C: vacuole plasma membrane	ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT3G07410	Predicted Phylogenetic profile method Co-expression	FSW = 0.8981	Class C: plasma membrane	ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING
AT1G28550	Predicted Phylogenetic profile method Co-expression	FSW = 0.8521	Class C: plasma membrane	ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT5G59840	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.5087	Class C: plasma membrane	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT1G07410	Predicted Phylogenetic profile method Co-expression	FSW = 0.8862	Class C: plasma membrane	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G39990	Predicted Phylogenetic profile method Co-expression	FSW = 0.8981	Class C: plasma membrane	RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT5G59150	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.9389	Class C: plasma membrane	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT3G46830	Predicted Phylogenetic profile method Co-expression	FSW = 0.9104	Class C: plasma membrane	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT1G06400	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.7296	Class C: plasma membrane	ARA-2 GTP BINDING
AT4G18430	Predicted Phylogenetic profile method Co-expression	FSW = 0.7468	Class C: plasma membrane	ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT5G65270	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.8800	Class C: plasma membrane	ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING
AT4G18800	Predicted Phylogenetic profile method Co-expression	FSW = 0.4253	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT1G73640	Predicted Phylogenetic profile method Co-expression	FSW = 0.9002	Class C: plasma membrane	ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT3G53610	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.8155	Class C: plasma membrane	ATRAB8 GTP BINDING
AT1G09630	Predicted Phylogenetic profile method Co-expression	FSW = 0.8308	Class C: plasma membrane	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT3G09900	Predicted Phylogenetic profile method	FSW = 0.4600	Class C: plasma membrane	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT5G47200	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.8254	Class C: plasma membrane	ATRAB1A GTP BINDING
AT2G43130	Predicted Phylogenetic profile method Co-expression	FSW = 0.9130	Class C: plasma membrane	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G43890	Predicted Phylogenetic profile method Co-expression	FSW = 0.8699	Class C: plasma membrane	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT3G11730	Predicted Phylogenetic profile method Co-expression	FSW = 0.6420	Class C: plasma membrane	ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT1G01200	Predicted Phylogenetic profile method Co-expression	FSW = 0.9292	Class C: nucleus	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT4G35860	Predicted Phylogenetic profile method	FSW = 0.8745	Unknown	ATGB2 (GTP-BINDING 2) GTP BINDING
AT2G22290	Predicted Phylogenetic profile method	FSW = 0.2176	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT5G03520	Predicted Gene fusion method Co-expression	FSW = 0.7096	Unknown	ATRAB8C GTP BINDING
AT3G54840	Predicted Phylogenetic profile method	FSW = 0.1704	Unknown	ARA6 GTP BINDING / GTPASE
AT2G33870	Predicted Phylogenetic profile method Co-expression	FSW = 0.8717	Unknown	ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT3G12160	Predicted Phylogenetic profile method Co-expression	FSW = 0.8669	Unknown	RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING
AT5G47960	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.8717	Unknown	ATRABA4C GTP BINDING
AT5G03530	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.8595	Unknown	RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT3G15060	Predicted Phylogenetic profile method Co-expression	FSW = 0.8717	Unknown	ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT5G60860	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.8717	Unknown	ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT2G31680	Predicted Phylogenetic profile method Co-expression	FSW = 0.8869	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT4G39890	Predicted Phylogenetic profile method	FSW = 0.6050	Unknown	ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING
AT4G17160	Predicted Phylogenetic profile method	FSW = 0.9420	Unknown	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G45750 - ( AtRABA1c (Arabidopsis Rab GTPase homolog A1c) GTP binding )

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FSW

C3

PEP

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