Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G45900 - ( APG7 (AUTOPHAGY 7) APG8 activating enzyme )
19 Proteins interacs with AT5G45900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G05630 | Predictedinteraction predictionAffinity Capture-Westerntwo hybridtwo hybridtwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.1678
| Unknown | AUTOPHAGY 8D (APG8D) |
AT1G62040 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.1333
| Unknown | ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING |
AT3G62870 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0054
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G51540 | Predictedinteraction prediction | FSW = 0.0462
| Unknown | METALLOENDOPEPTIDASE |
AT4G18440 | PredictedAffinity Capture-MS | FSW = 0.0485
| Unknown | ADENYLOSUCCINATE LYASE PUTATIVE / ADENYLOSUCCINASE PUTATIVE |
AT1G80190 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT1G08560 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0101
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G03800 | Predictedtwo hybrid | FSW = 0.0626
| Unknown | SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR |
AT1G75560 | Predictedinteraction prediction | FSW = 0.0920
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G20010 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0214
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT1G11100 | PredictedAffinity Capture-MS | FSW = 0.0559
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED |
AT2G20290 | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT3G13970 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.0523
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.0108
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G27130 | PredictedPhenotypic Enhancement | FSW = 0.0198
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G61500 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-WesternReconstituted Complexinterologs mapping | FSW = 0.3253
| Unknown | ATG3 |
AT1G54210 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-Westerntwo hybrid | FSW = 0.0435
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT3G19240 | Predictedinteraction predictiontwo hybrid | FSW = 0.0559
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN N-TERMINAL PROTEIN MYRISTOYLATION LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) VACUOLAR IMPORT AND DEGRADATION VID27-RELATED (INTERPROIPR013863) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DEM PROTEIN-RELATED / DEFECTIVE EMBRYO AND MERISTEMS PROTEIN-RELATED (TAIRAT4G334001) HAS 206 BLAST HITS TO 202 PROTEINS IN 88 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 11 FUNGI - 117 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 40 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454