Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46030 - ( unknown protein )
40 Proteins interacs with AT5G46030Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0041
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G59690 | PredictedPhenotypic Enhancement | FSW = 0.1156
| Unknown | HISTONE H4 |
AT1G02780 | PredictedReconstituted Complex | FSW = 0.0136
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G23630 | PredictedPhenotypic Suppression | FSW = 0.0600
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.1086
| Unknown | SEC22 TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0220
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G44680 | PredictedReconstituted Complex | FSW = 0.0823
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G44530 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2291
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G55620 | Predictedinterologs mapping | FSW = 0.0198
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT5G64630 | PredictedPhenotypic Enhancement | FSW = 0.1089
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0655
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G09920 | PredictedSynthetic Lethality | FSW = 0.0679
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.0726
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G63210 | PredictedSynthetic Lethality | FSW = 0.1741
| Unknown | RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR |
AT2G15430 | PredictedPhenotypic Enhancement | FSW = 0.0979
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G38560 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2082
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT1G65440 | PredictedSynthetic Lethality | FSW = 0.1426
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT2G27470 | PredictedPhenotypic Enhancement | FSW = 0.1907
| Unknown | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT5G38470 | PredictedPhenotypic Enhancement | FSW = 0.0086
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT4G17760 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III |
AT1G54390 | PredictedPhenotypic Enhancement | FSW = 0.0900
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G61040 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2337
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT2G23070 | PredictedReconstituted Complexbiochemical | FSW = 0.1035
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G22590 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1424
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT5G10400 | PredictedPhenotypic Enhancement | FSW = 0.1657
| Unknown | HISTONE H3 |
AT1G32130 | PredictedPhenotypic Enhancement | FSW = 0.4328
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1714
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G37840 | Predictedbiochemical | FSW = 0.0388
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.1265
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.0983
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.1070
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10390 | PredictedPhenotypic Enhancement | FSW = 0.1294
| Unknown | HISTONE H3 |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.1527
| Unknown | ORMDL FAMILY PROTEIN |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.1358
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G61150 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2684
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.0541
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G63670 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2584
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT2G23080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0682
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT5G08565 | PredictedSynthetic Lethality | FSW = 0.1480
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454