Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46180 - ( delta-OAT ornithine-oxo-acid transaminase )

22 Proteins interacs with AT5G46180
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G39660

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2364

Unknown

AGT2 (ALANINEGLYOXYLATE AMINOTRANSFERASE 2) ALANINE-GLYOXYLATE TRANSAMINASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE
AT3G22200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2294

Unknown

POP2 (POLLEN-PISTIL INCOMPATIBILITY 2) 4-AMINOBUTYRATE TRANSAMINASE/ 4-AMINOBUTYRATEPYRUVATE TRANSAMINASE
AT1G80600

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2364

Unknown

WIN1 (HOPW1-1-INTERACTING 1) N2-ACETYL-L-ORNITHINE2-OXOGLUTARATE 5-AMINOTRANSFERASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE
AT5G52640

Predicted

two hybrid

FSW = 0.0033

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G18040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0112

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G57015

Predicted

Affinity Capture-MS

biochemical

interaction prediction

FSW = 0.0066

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0089

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT2G07727

Predicted

two hybrid

Phenotypic Suppression

FSW = 0.0229

Unknown

CYTOCHROME B (MTCYB) (COB) (CYTB)
AT3G57000

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0160

Unknown

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT2G38400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2294

Unknown

AGT3 (ALANINEGLYOXYLATE AMINOTRANSFERASE 3) ALANINE-GLYOXYLATE TRANSAMINASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE
AT3G08860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2294

Unknown

ALANINE--GLYOXYLATE AMINOTRANSFERASE PUTATIVE / BETA-ALANINE-PYRUVATE AMINOTRANSFERASE PUTATIVE / AGT PUTATIVE
AT5G41150

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0081

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT5G14800

Predicted

Shared biological function

Gene neighbors method

Co-expression

FSW = 0.0229

Unknown

P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT1G16280

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0213

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G54290

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0074

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT3G13970

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0277

Unknown

APG12B (AUTOPHAGY 12 B)
AT3G47120

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0116

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G53570

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0305

Unknown

AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G26110

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0160

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G55810

Predicted

two hybrid

interaction prediction

FSW = 0.0395

Unknown

ATNMNAT (A THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE) NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE/ NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE
AT1G54210

Predicted

Affinity Capture-MS

FSW = 0.0183

Unknown

ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING
AT3G25670

Predicted

Gene fusion method

FSW = 0.0395

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454