Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46180 - ( delta-OAT ornithine-oxo-acid transaminase )
22 Proteins interacs with AT5G46180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G39660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2364
| Unknown | AGT2 (ALANINEGLYOXYLATE AMINOTRANSFERASE 2) ALANINE-GLYOXYLATE TRANSAMINASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE |
AT3G22200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2294
| Unknown | POP2 (POLLEN-PISTIL INCOMPATIBILITY 2) 4-AMINOBUTYRATE TRANSAMINASE/ 4-AMINOBUTYRATEPYRUVATE TRANSAMINASE |
AT1G80600 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2364
| Unknown | WIN1 (HOPW1-1-INTERACTING 1) N2-ACETYL-L-ORNITHINE2-OXOGLUTARATE 5-AMINOTRANSFERASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0033
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0112
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G57015 | PredictedAffinity Capture-MSbiochemicalinteraction prediction | FSW = 0.0066
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G07727 | Predictedtwo hybridPhenotypic Suppression | FSW = 0.0229
| Unknown | CYTOCHROME B (MTCYB) (COB) (CYTB) |
AT3G57000 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0160
| Unknown | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
AT2G38400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2294
| Unknown | AGT3 (ALANINEGLYOXYLATE AMINOTRANSFERASE 3) ALANINE-GLYOXYLATE TRANSAMINASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE |
AT3G08860 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2294
| Unknown | ALANINE--GLYOXYLATE AMINOTRANSFERASE PUTATIVE / BETA-ALANINE-PYRUVATE AMINOTRANSFERASE PUTATIVE / AGT PUTATIVE |
AT5G41150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0081
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT5G14800 | PredictedShared biological functionGene neighbors methodCo-expression | FSW = 0.0229
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT1G16280 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0213
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0074
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0277
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT3G47120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0116
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G53570 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0305
| Unknown | AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0160
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G55810 | Predictedtwo hybridinteraction prediction | FSW = 0.0395
| Unknown | ATNMNAT (A THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE) NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE/ NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT3G25670 | PredictedGene fusion method | FSW = 0.0395
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454