Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46190 - ( KH domain-containing protein )
42 Proteins interacs with AT5G46190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.0930
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0586
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G11150 | Predictedtwo hybrid | FSW = 0.0155
| Unknown | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT4G18730 | PredictedAffinity Capture-MS | FSW = 0.0326
| Unknown | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.0770
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT5G40950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0486
| Unknown | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G52150 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0634
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT2G04390 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0605
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT4G02230 | Predictedtwo hybrid | FSW = 0.0459
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT4G11380 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | BETA-ADAPTIN PUTATIVE |
AT5G20920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0245
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT2G41500 | Predictedtwo hybridCo-expression | FSW = 0.0051
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT3G57150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0778
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT4G18040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0688
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT4G18375 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0200
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT3G07880 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.0561
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G61580 | Predictedtwo hybrid | FSW = 0.0821
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G02200 | Predictedtwo hybrid | FSW = 0.0209
| Unknown | PROTEASOME FAMILY PROTEIN |
AT5G04430 | Predictedtwo hybridtwo hybrid | FSW = 0.2830
| Unknown | BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING |
AT2G30330 | Predictedtwo hybrid | FSW = 0.0296
| Unknown | GCN5L1 FAMILY PROTEIN |
AT3G46220 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | UNKNOWN PROTEIN |
AT5G09230 | Predictedtwo hybrid | FSW = 0.0217
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G50870 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | UBC27 (UBIQUITIN-CONJUGATING ENZYME 27) UBIQUITIN-PROTEIN LIGASE |
AT2G17870 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | COLD-SHOCK DNA-BINDING FAMILY PROTEIN |
AT2G17900 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | SDG37 ZINC ION BINDING |
AT5G26751 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G55150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0257
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | HISTONE H4 |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0656
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT1G60780 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT2G33240 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0162
| Unknown | XID MOTOR/ PROTEIN BINDING |
AT2G37840 | Predictedbiochemical | FSW = 0.0047
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0123
| Unknown | ENDONUCLEASE PUTATIVE |
AT3G13700 | Predictedtwo hybrid | FSW = 0.0155
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT5G56140 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT1G75660 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454