Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46280 - ( DNA replication licensing factor putative )
50 Proteins interacs with AT5G46280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G37270 | PredictedAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.0610
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0072
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G01370 | Predictedbiochemical | FSW = 0.0170
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G09770 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0088
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0175
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0036
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G48750 | Predictedbiochemicalbiochemicalinteraction prediction | FSW = 0.0110
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G75950 | Predictedtwo hybrid | FSW = 0.0025
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G03540 | Predictedinterologs mapping | FSW = 0.1142
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT2G30110 | PredictedSynthetic Rescue | FSW = 0.0077
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT2G24490 | Predictedtwo hybrid | FSW = 0.0529
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.0939
| Unknown | REPLICATION PROTEIN-RELATED |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G44900 | Predictedtwo hybridSynthetic Lethalityinterologs mappingColocalizationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninterologs mappingColocalizationAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSAffinity Capture-WesternColocalizationco-fractionationCo-fractionationinterologs mappingSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.3174
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT3G13445 | PredictedSynthetic Lethality | FSW = 0.0469
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G02060 | Predictedtwo hybridin vivoin vivoin vivointerologs mappingColocalizationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-Westerntwo hybridtwo hybridin vivoAffinity Capture-MStwo hybridin vivoAffinity Capture-WesternColocalizationco-fractionationCo-fractionationinterologs mappingCo-purificationinterologs mappinginteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.2674
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G53530 | PredictedSynthetic Lethality | FSW = 0.0632
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT1G69220 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G01020 | Predictedinterologs mapping | FSW = 0.0651
| Unknown | ARV1 |
AT3G25980 | PredictedPhenotypic SuppressionCo-expression | FSW = 0.0224
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0119
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G63960 | Predictedinterologs mappingAffinity Capture-Western | FSW = 0.0628
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G60570 | Predictedtwo hybrid | FSW = 0.0168
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT1G07270 | Predictedin vivoin vivoin vitroin vitroCo-expression | FSW = 0.0629
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT2G01120 | Predictedtwo hybridAffinity Capture-MSCo-expression | FSW = 0.1987
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G07690 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridin vivoin vivoin vitroin vitrointerologs mappinginterologs mappingColocalizationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninterologs mappingPhylogenetic profile methodCo-expression | FSW = 0.2635
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G20980 | Predictedin vivoin vitrotwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.2366
| Unknown | MCM10 |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-MSin vitroin vivoin vivoin vitroAffinity Capture-MStwo hybridinterologs mappingCo-purification | FSW = 0.0931
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G41350 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0373
| Unknown | UNKNOWN PROTEIN |
AT3G25100 | Predictedinteraction predictiontwo hybridSynthetic LethalitySynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSPhenotypic SuppressionCo-expression | FSW = 0.0867
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G54380 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridin vivoin vivoin vivoin vivoin vitroin vitroin vitroin vitro | FSW = 0.0119
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G16970 | Predictedbiochemicalin vitrobiochemicalsynthetic growth defect | FSW = 0.1009
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G29910 | Predictedtwo hybridCo-expression | FSW = 0.1041
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G44635 | PredictedColocalizationAffinity Capture-MS | FSW = 0.1407
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT3G14890 | PredictedAffinity Capture-MS | FSW = 0.0232
| Unknown | PHOSPHOESTERASE |
AT3G54180 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT1G73810 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinterologs mappingtwo hybridCo-purification | FSW = 0.2571
| Unknown | UNKNOWN PROTEIN |
AT2G16440 | PredictedColocalizationColocalizationAffinity Capture-WesternAffinity Capture-WesternCo-expression | FSW = 0.3171
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G21890 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinterologs mappingCo-purificationCo-crystal Structureco-fractionationCo-fractionation | FSW = 0.1952
| Unknown | CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G23070 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationinterologs mapping | FSW = 0.0556
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G12490 | PredictedSynthetic Lethality | FSW = 0.0602
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT5G16290 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationinterologs mapping | FSW = 0.1011
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.0690
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | F-BOX FAMILY PROTEIN |
AT2G16740 | PredictedSynthetic Lethality | FSW = 0.0066
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT4G26510 | PredictedSynthetic Lethality | FSW = 0.0433
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G49010 | PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT1G74510 | Predictedtwo hybrid | FSW = 0.0431
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT3G09660 | PredictedPhylogenetic profile method | FSW = 0.1232
| Unknown | MCM8 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454