Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46400 - ( PRP39-2 )

22 Proteins interacs with AT5G46400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G02840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5730

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3797

Unknown

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G09760

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4773

Unknown

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT5G64270

Predicted

Affinity Capture-MS

FSW = 0.3130

Unknown

SPLICING FACTOR PUTATIVE
AT1G80070

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.3612

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT2G33340

Predicted

Co-purification

FSW = 0.2823

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G18790

Predicted

two hybrid

FSW = 0.0776

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT5G08290

Predicted

Affinity Capture-MS

FSW = 0.5558

Unknown

YLS8 CATALYTIC
AT3G50670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1322

Unknown

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G47640

Predicted

Affinity Capture-MS

FSW = 0.3050

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G19840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4235

Unknown

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT2G41500

Predicted

Affinity Capture-MS

FSW = 0.3400

Unknown

EMB2776 NUCLEOTIDE BINDING
AT4G30220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4770

Unknown

RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT1G20580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4896

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G47500

Predicted

two hybrid

FSW = 0.0229

Unknown

ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING
AT3G55220

Predicted

Affinity Capture-MS

FSW = 0.5097

Unknown

SPLICING FACTOR PUTATIVE
AT4G21660

Predicted

Affinity Capture-MS

FSW = 0.4452

Unknown

PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT1G60170

Predicted

Affinity Capture-MS

FSW = 0.4661

Unknown

EMB1220 (EMBRYO DEFECTIVE 1220)
AT3G03340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3474

Unknown

UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT4G03430

Predicted

Affinity Capture-MS

FSW = 0.2408

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT5G06160

Predicted

Affinity Capture-MS

FSW = 0.3592

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G51300

Predicted

two hybrid

FSW = 0.1390

Unknown

SPLICING FACTOR-RELATED

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454