Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46630 - ( clathrin adaptor complexes medium subunit family protein )
18 Proteins interacs with AT5G46630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
ETG7037 | ExperimentalAffinity Capture-Western | FSW = 0.0345
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT5G27770 | Predictedtwo hybrid | FSW = 0.1259
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L22 (RPL22C) |
AT3G05560 | Predictedtwo hybridtwo hybrid | FSW = 0.0364
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT4G26390 | Predictedtwo hybrid | FSW = 0.0818
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
AT5G56350 | Predictedtwo hybridtwo hybrid | FSW = 0.0364
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
AT4G11380 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0546
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
AT5G60660 | Predictedin vitro | FSW = 0.0331
| Class C:plasma membrane | PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL |
AT2G36010 | Predictedtwo hybridtwo hybrid | FSW = 0.0218
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G57210 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | MICROTUBULE-ASSOCIATED PROTEIN-RELATED |
AT1G08190 | Predictedtwo hybridtwo hybrid | FSW = 0.0272
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT4G21660 | Predictedtwo hybridtwo hybrid | FSW = 0.0139
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT2G32850 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0456
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G05520 | PredictedReconstituted Complex | FSW = 0.2045
| Unknown | ATEHD2 (EPS15 HOMOLOGY DOMAIN 2) GTP BINDING / GTPASE/ CALCIUM ION BINDING |
AT4G24550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1910
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G60780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2017
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT1G10730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1933
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G56590 | PredictedPhylogenetic profile method | FSW = 0.2193
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454