Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46630 - ( clathrin adaptor complexes medium subunit family protein )

18 Proteins interacs with AT5G46630
LocusMethodFSW Cellular Compartment Classification (C3)Description
ETG7037Experimental

Affinity Capture-Western

FSW = 0.0345

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT5G27770

Predicted

two hybrid

FSW = 0.1259

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L22 (RPL22C)
AT3G05560

Predicted

two hybrid

two hybrid

FSW = 0.0364

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT4G26390

Predicted

two hybrid

FSW = 0.0818

Class C:

plasma membrane

PYRUVATE KINASE PUTATIVE
AT5G56350

Predicted

two hybrid

two hybrid

FSW = 0.0364

Class C:

plasma membrane

PYRUVATE KINASE PUTATIVE
AT4G11380

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0546

Class C:

plasma membrane

BETA-ADAPTIN PUTATIVE
AT5G60660

Predicted

in vitro

FSW = 0.0331

Class C:

plasma membrane

PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL
AT2G36010

Predicted

two hybrid

two hybrid

FSW = 0.0218

Unknown

E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G22220

Predicted

two hybrid

FSW = 0.0139

Unknown

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G57210

Predicted

two hybrid

FSW = 0.0426

Unknown

MICROTUBULE-ASSOCIATED PROTEIN-RELATED
AT1G08190

Predicted

two hybrid

two hybrid

FSW = 0.0272

Unknown

VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT4G21660

Predicted

two hybrid

two hybrid

FSW = 0.0139

Unknown

PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT2G32850

Predicted

in vitro

in vitro

Affinity Capture-MS

FSW = 0.0456

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G05520

Predicted

Reconstituted Complex

FSW = 0.2045

Unknown

ATEHD2 (EPS15 HOMOLOGY DOMAIN 2) GTP BINDING / GTPASE/ CALCIUM ION BINDING
AT4G24550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1910

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G60780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2017

Unknown

HAP13 (HAPLESS 13) PROTEIN BINDING
AT1G10730

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1933

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G56590

Predicted

Phylogenetic profile method

FSW = 0.2193

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454