Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46750 - ( AGD9 (ARF-GAP DOMAIN 9) ARF GTPase activator/ DNA binding / zinc ion binding )
19 Proteins interacs with AT5G46750Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G44610 | Predictedinteraction prediction | FSW = 0.0256
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT4G16520 | Predictedtwo hybrid | FSW = 0.0522
| Unknown | ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING |
AT2G05630 | Predictedtwo hybrid | FSW = 0.0860
| Unknown | AUTOPHAGY 8D (APG8D) |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | Predictedtwo hybrid | FSW = 0.0727
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G62020 | Predictedinteraction prediction | FSW = 0.1204
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT2G31660 | Predictedinteraction prediction | FSW = 0.0202
| Unknown | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0597
| Unknown | CHC1 |
AT2G26940 | Predictedtwo hybrid | FSW = 0.0404
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G25980 | Predictedinteraction prediction | FSW = 0.0050
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G31300 | Predictedinteraction prediction | FSW = 0.0474
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT5G52210 | Predictedinteraction prediction | FSW = 0.0543
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G15750 | Predictedinteraction prediction | FSW = 0.0165
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
AT3G22590 | Predictedinteraction prediction | FSW = 0.0173
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G34450 | Predictedinteraction prediction | FSW = 0.1086
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT4G31480 | Predictedinteraction prediction | FSW = 0.1250
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT1G79990 | Predictedinteraction prediction | FSW = 0.0798
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT4G17890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3470
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT2G19780 | PredictedGene fusion method | FSW = 0.0345
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454