Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47080 - ( CKB1 protein kinase regulator )
45 Proteins interacs with AT5G47080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G46830 | Experimentalpull downprotein kinase assaytwo hybridReconstituted Complexin vitro | FSW = 0.0454
| Unknown | CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT1G02340 | Experimentaltwo hybrid | FSW = 0.0196
| Unknown | HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G67380 | Experimentalprotein kinase assay | FSW = 0.0175
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT5G02500 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT5G20290 | Predictedtwo hybrid | FSW = 0.0058
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G09820 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G21065 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | UNKNOWN PROTEIN |
AT1G64190 | PredictedAffinity Capture-MSSynthetic LethalityCo-purificationCo-purificationCo-purificationReconstituted ComplexCo-purificationinterologs mappingSynthetic LethalityAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0992
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT4G32520 | Predictedin vitro | FSW = 0.0238
| Unknown | SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING |
AT1G17880 | Predictedin vitrotwo hybrid | FSW = 0.0123
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
AT5G39740 | Predictedtwo hybridtwo hybridtwo hybridin vivoin vivotwo hybridin vitroin vivo | FSW = 0.0194
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT1G75370 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHATIDYLINOSITOL TRANSFER-LIKE PROTEIN PUTATIVE |
AT1G07180 | PredictedSynthetic Lethality | FSW = 0.0407
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT4G09570 | PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT4G29510 | Predictedtwo hybrid | FSW = 0.0093
| Unknown | PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE |
AT5G44500 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT5G57120 | Predictedin vivoin vitro | FSW = 0.0196
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN NUCLEOLUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF (INTERPROIPR006594) SRP40 C-TERMINAL (INTERPROIPR007718) HAS 90949 BLAST HITS TO 45608 PROTEINS IN 1620 SPECIES ARCHAE - 300 BACTERIA - 8281 METAZOA - 37603 FUNGI - 8095 PLANTS - 3374 VIRUSES - 548 OTHER EUKARYOTES - 32748 (SOURCE NCBI BLINK) |
AT1G06960 | PredictedAffinity Capture-Western | FSW = 0.0751
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G36170 | PredictedSynthetic Lethality | FSW = 0.0566
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G54350 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | EMB1967 (EMBRYO DEFECTIVE 1967) |
AT5G15550 | Predictedtwo hybrid | FSW = 0.0164
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G15960 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT3G23890 | Predictedin vitro | FSW = 0.0141
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT5G03730 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G29900 | PredictedPhenotypic Enhancement | FSW = 0.0083
| Unknown | PRESENILIN FAMILY PROTEIN |
AT3G14600 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AC) |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G35320 | Predictedtwo hybrid | FSW = 0.0210
| Unknown | ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0044
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT3G07930 | Predictedtwo hybrid | FSW = 0.0667
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT1G34770 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | MAGE-8 ANTIGEN-RELATED |
AT4G10790 | Predictedin vitroin vitroin vitro | FSW = 0.0256
| Unknown | UBX DOMAIN-CONTAINING PROTEIN |
AT1G07820 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationCo-purificationCo-purificationSynthetic LethalityAffinity Capture-MS | FSW = 0.1910
| Unknown | HISTONE H4 |
AT1G55255 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | HISTONE H4 |
AT2G19220 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.2101
| Unknown | UNKNOWN PROTEIN |
AT3G01100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationCo-purificationAffinity Capture-MSCo-purification | FSW = 0.1439
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G22290 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.0638
| Unknown | UNKNOWN PROTEIN |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.0492
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0030
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G17860 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.1168
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT4G21490 | PredictedSynthetic Lethality | FSW = 0.0460
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G01770 | PredictedReconstituted ComplexReconstituted ComplexSynthetic Rescue | FSW = 0.0932
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G45620 | PredictedAffinity Capture-Western | FSW = 0.0562
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G59040 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454