Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47240 - ( atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8) hydrolase )
30 Proteins interacs with AT5G47240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G11980 | Predictedtwo hybridtwo hybrid | FSW = 0.0485
| Unknown | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT-RELATED / COG COMPLEX COMPONENT-RELATED |
AT3G55200 | Predictedtwo hybrid | FSW = 0.0534
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G29900 | Predictedtwo hybridtwo hybrid | FSW = 0.0174
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT5G15680 | Predictedtwo hybridtwo hybrid | FSW = 0.0522
| Unknown | BINDING |
AT2G35690 | Predictedtwo hybridtwo hybrid | FSW = 0.0123
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT2G44680 | Predictedtwo hybrid | FSW = 0.0040
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G08720 | Predictedtwo hybridtwo hybrid | FSW = 0.0121
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT2G37060 | Predictedtwo hybridtwo hybrid | FSW = 0.1212
| Unknown | NF-YB8 (NUCLEAR FACTOR Y SUBUNIT B8) TRANSCRIPTION FACTOR |
AT1G07370 | Predictedtwo hybridtwo hybrid | FSW = 0.0140
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G61890 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G03730 | Predictedtwo hybrid | FSW = 0.0056
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G14250 | Predictedtwo hybridtwo hybrid | FSW = 0.0186
| Unknown | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT5G38470 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G20850 | Predictedtwo hybridtwo hybrid | FSW = 0.0192
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G08290 | Predictedtwo hybrid | FSW = 0.0255
| Unknown | ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3) |
AT1G31870 | Predictedtwo hybridtwo hybrid | FSW = 0.0962
| Unknown | UNKNOWN PROTEIN |
AT2G21270 | Predictedtwo hybridtwo hybrid | FSW = 0.0255
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
AT3G55220 | Predictedtwo hybrid | FSW = 0.0479
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G24740 | Predictedtwo hybrid | FSW = 0.1112
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
AT5G09880 | Predictedtwo hybrid | FSW = 0.0424
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G10810 | Predictedtwo hybridtwo hybrid | FSW = 0.0557
| Unknown | ATER |
AT5G27620 | Predictedtwo hybridtwo hybrid | FSW = 0.0716
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G27640 | Predictedtwo hybridtwo hybrid | FSW = 0.0082
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G41770 | Predictedtwo hybridtwo hybrid | FSW = 0.0458
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G55260 | Predictedtwo hybridtwo hybrid | FSW = 0.0538
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G61530 | Predictedtwo hybrid | FSW = 0.1068
| Unknown | SMALL G PROTEIN FAMILY PROTEIN / RHOGAP FAMILY PROTEIN |
AT5G61980 | Predictedtwo hybrid | FSW = 0.0762
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT5G12980 | Predictedtwo hybrid | FSW = 0.0346
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT2G16940 | Predictedtwo hybrid | FSW = 0.0323
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G09100 | Predictedtwo hybrid | FSW = 0.0808
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454