Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47670 - ( NF-YB6 (NUCLEAR FACTOR Y SUBUNIT B6) transcription activator/ transcription activator binding / transcription factor )

11 Proteins interacs with AT5G47670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15840

Experimental

FSW = 0.0334

Class A:

nucleus

Class D:

nucleus (p = 0.78)

CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G59220

Experimental

pull down

FSW = 0.0697

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

PRN (PIRIN) CALMODULIN BINDING
AT3G16630

Predicted

two hybrid

FSW = 0.0863

Class C:

nucleus

KINESIN-13A ATP BINDING / MICROTUBULE MOTOR
AT3G12480

Predicted

two hybrid

FSW = 0.0566

Class C:

nucleus

NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR
AT1G72440

Predicted

in vitro

two hybrid

FSW = 0.0114

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G43250

Predicted

two hybrid

FSW = 0.1262

Class C:

nucleus

NF-YC13 (NUCLEAR FACTOR Y SUBUNIT C13) DNA BINDING / TRANSCRIPTION FACTOR
AT5G63470

Predicted

in vitro

FSW = 0.0462

Class C:

nucleus

NF-YC4 (NUCLEAR FACTOR Y SUBUNIT C4) DNA BINDING / TRANSCRIPTION FACTOR
AT3G13445

Predicted

in vivo

in vitro

FSW = 0.0082

Class C:

nucleus

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G12840

Predicted

in vitro

FSW = 0.0462

Class C:

nucleus

NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR
AT4G38680

Predicted

in vitro

in vitro

Affinity Capture-MS

FSW = 0.0207

Unknown

GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G47650

Predicted

two hybrid

FSW = 0.0315

Unknown

ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454