Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47700 - ( 60S acidic ribosomal protein P1 (RPP1C) )
37 Proteins interacs with AT5G47700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G01100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1259
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A) |
AT3G11250 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0256
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0C) |
AT1G16920 | Predictedtwo hybridCo-expression | FSW = 0.0125
| Class C:plasma membrane | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT2G27710 | Predictedtwo hybridCo-expression | FSW = 0.0139
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT1G09630 | Predictedtwo hybrid | FSW = 0.0187
| Class C:plasma membrane | ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING |
AT5G09660 | Predictedsynthetic growth defect | FSW = 0.0678
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0305
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT1G07180 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G62760 | Predictedtwo hybrid | FSW = 0.0473
| Unknown | NUCLEAR PROTEIN ZAP-RELATED |
AT4G01850 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0544
| Unknown | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT3G02530 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0204
| Unknown | CHAPERONIN PUTATIVE |
AT4G02150 | Predictedtwo hybrid | FSW = 0.0488
| Unknown | MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER |
AT1G09270 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G77670 | Predictedtwo hybridtwo hybrid | FSW = 0.0303
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
AT5G26360 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0495
| Unknown | CHAPERONIN PUTATIVE |
AT1G71790 | Predictedtwo hybridtwo hybrid | FSW = 0.0135
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT3G46220 | Predictedtwo hybridtwo hybrid | FSW = 0.0325
| Unknown | UNKNOWN PROTEIN |
AT5G22110 | Predictedtwo hybridtwo hybrid | FSW = 0.0195
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT3G44590 | Predictedtwo hybrid | FSW = 0.0476
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT3G19670 | PredictedSynthetic Lethality | FSW = 0.0200
| Unknown | PROTEIN BINDING |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0534
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G47830 | Predictedsynthetic growth defect | FSW = 0.0456
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G54560 | Predictedbiochemical | FSW = 0.0291
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G66590 | Predictedsynthetic growth defect | FSW = 0.0369
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0299
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0646
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0292
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT5G16170 | Predictedsynthetic growth defect | FSW = 0.0613
| Unknown | UNKNOWN PROTEIN |
AT5G42720 | Predictedsynthetic growth defect | FSW = 0.0423
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.0036
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G63190 | PredictedAffinity Capture-MSin vitro | FSW = 0.0256
| Unknown | MA3 DOMAIN-CONTAINING PROTEIN |
AT1G64140 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN SPERM CELL MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS LORICRIN-RELATED (TAIRAT5G645501) HAS 2298 BLAST HITS TO 1429 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 1626 FUNGI - 29 PLANTS - 243 VIRUSES - 9 OTHER EUKARYOTES - 349 (SOURCE NCBI BLINK) |
AT2G29525 | Predictedtwo hybrid | FSW = 0.0667
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHATIDIC ACID PHOSPHATASE-RELATED / PAP2-RELATED (TAIRAT3G540201) HAS 352 BLAST HITS TO 352 PROTEINS IN 78 SPECIES ARCHAE - 0 BACTERIA - 4 METAZOA - 245 FUNGI - 0 PLANTS - 50 VIRUSES - 0 OTHER EUKARYOTES - 53 (SOURCE NCBI BLINK) |
AT5G64550 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | LORICRIN-RELATED |
AT4G00810 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0363
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT5G24510 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2215
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454