Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48440 - ( oxidoreductase )

9 Proteins interacs with AT5G48440
LocusMethodFSW Cellular Compartment Classification (C3)Description
ATCG00120Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.0697

Unknown

ENCODES THE ATPASE ALPHA SUBUNIT WHICH IS A SUBUNIT OF ATP SYNTHASE AND PART OF THE CF1 PORTION WHICH CATALYZES THE CONVERSION OF ADP TO ATP USING THE PROTON MOTIVE FORCE THIS COMPLEX IS LOCATED IN THE THYLAKOID MEMBRANE OF THE CHLOROPLAST
AT2G30390

Predicted

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FSW = 0.0245

Unknown

FC2 (FERROCHELATASE 2) FERROCHELATASE
AT2G25830

Predicted

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FSW = 0.0585

Unknown

YEBC-RELATED
AT2G18230

Predicted

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FSW = 0.0166

Unknown

ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G22210Predicted

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FSW = 0.1131

Unknown

TREHALOSE-6-PHOSPHATE PHOSPHATASE PUTATIVE
AT1G73740

Predicted

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FSW = 0.0618

Unknown

GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN
AT2G04560Predicted

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FSW = 0.0618

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G44600

Predicted

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FSW = 0.0585

Unknown

CYP71 (CYCLOPHILIN71) CHROMATIN BINDING / HISTONE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G10050

Predicted

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FSW = 0.0585

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454