Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G48630 - ( cyclin family protein )
44 Proteins interacs with AT5G48630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G19050 | Experimentaltwo hybrid | FSW = 0.0170
| Unknown | ARR7 (RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G18070 | Predictedtwo hybridtwo hybrid | FSW = 0.0153
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT1G80350 | Predictedtwo hybridtwo hybrid | FSW = 0.0170
| Unknown | ERH3 (ECTOPIC ROOT HAIR 3) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G16030 | PredictedAffinity Capture-Western | FSW = 0.0250
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT4G35800 | Predictedin vivoin vitroSynthetic Rescue | FSW = 0.0390
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G48750 | Predictedtwo hybridtwo hybridEnriched domain pairCo-expression | FSW = 0.0369
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G36490 | Predictedinterologs mapping | FSW = 0.0325
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G17750 | Predictedtwo hybrid | FSW = 0.0259
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G24490 | Predictedtwo hybrid | FSW = 0.0377
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | REPLICATION PROTEIN-RELATED |
AT5G59710 | Predictedinteraction prediction | FSW = 0.0909
| Unknown | VIP2 (VIRE2 INTERACTING PROTEIN2) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT1G72560 | Predictedinterologs mapping | FSW = 0.0372
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT1G69220 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G08730 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G29540 | PredictedSynthetic Lethality | FSW = 0.0269
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G14045 | Predictedtwo hybridtwo hybrid | FSW = 0.0179
| Unknown | UNKNOWN PROTEIN |
AT2G27960 | Predictedtwo hybridtwo hybrid | FSW = 0.0546
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0488
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G54180 | Predictedtwo hybrid | FSW = 0.0714
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G27620 | Predictedtwo hybridtwo hybrid | FSW = 0.0524
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G63610 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridReconstituted ComplexReconstituted Complexin vivoin vivoin vitroin vitroAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-WesternReconstituted Complexin vivoin vitrotwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.2367
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G21350 | Predictedin vitro | FSW = 0.0504
| Unknown | RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED |
AT3G12980 | Predictedco-fractionationCo-fractionation | FSW = 0.0476
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G41910 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT2G23080 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-crystal StructureReconstituted ComplexCo-purificationSynthetic Lethalitytwo hybrid | FSW = 0.0758
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G62760 | PredictedCo-crystal Structure | FSW = 0.0698
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G04700 | PredictedReconstituted ComplexReconstituted ComplexReconstituted Complexinterologs mappinginterologs mappingReconstituted ComplexReconstituted ComplexReconstituted ComplexCo-crystal StructureCo-crystal StructureReconstituted ComplexReconstituted ComplexCo-crystal StructureCo-crystal StructureReconstituted Complexinterologs mapping | FSW = 0.0492
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21480 | PredictedReconstituted Complex | FSW = 0.0250
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0066
| Unknown | COX19 FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT1G02080 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0847
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G07705 | PredictedAffinity Capture-Western | FSW = 0.0763
| Unknown | TRANSCRIPTION REGULATOR |
AT3G01090 | Predictedinteraction predictionAffinity Capture-WesternSynthetic Rescuetwo hybridEnriched domain pairCo-expression | FSW = 0.0167
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G06580 | Predictedinterologs mapping | FSW = 0.0395
| Unknown | GALK ATP BINDING / GALACTOKINASE |
AT4G19110 | Predictedinterologs mappingEnriched domain pairCo-expression | FSW = 0.0622
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G45000 | PredictedPhenotypic Suppression | FSW = 0.0344
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0491
| Unknown | ENDONUCLEASE PUTATIVE |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.0488
| Unknown | NUCLEOTIDE BINDING |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.0448
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0377
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0163
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G40116 | PredictedSynthetic Rescue | FSW = 0.0340
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G58560 | Predictedinteraction prediction | FSW = 0.0584
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G48640 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1642
| Unknown | CYCLIN FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454