Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48690 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown CONTAINS InterPro DOMAIN/s Ubiquitin-associated/translation elongation factor EF1B N-terminal (InterProIPR000449) Ubiquitin-associated/translation elongation factor EF1B N-terminal eukaryote (InterProIPR015940) PUG (InterProIPR006567) UBA-like (InterProIPR009060) BEST Arabidopsis thaliana protein match is ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIRAT1G048501) Has 6741 Blast hits to 4773 proteins in 362 species Archae - 9 Bacteria - 355 Metazoa - 2762 Fungi - 868 Plants - 184 Viruses - 19 Other Eukaryotes - 2544 (source NCBI BLink) )

5 Proteins interacs with AT5G48690
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G56290

Predicted

two hybrid

FSW = 0.0345

Unknown

 PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING
AT2G38960

Predicted

two hybrid

FSW = 0.0119

Unknown

 AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT2G02390

Predicted

two hybrid

FSW = 0.0697

Unknown

 ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1) CATALYTIC/ GLUTATHIONE TRANSFERASE
AT5G03340

Predicted

two hybrid

FSW = 0.0203

Unknown

 CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT5G38110

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

 ASF1B (ANTI- SILENCING FUNCTION 1B)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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