Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48700 - ( ubiquitin-related )
23 Proteins interacs with AT5G48700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G19320 | Predictedin vivoin vivoReconstituted Complexin vitroAffinity Capture-MS | FSW = 0.0862
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT5G16150 | Predictedin vivo | FSW = 0.0284
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G17750 | Predictedtwo hybrid | FSW = 0.0762
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G15880 | Predictedin vivoin vitro | FSW = 0.0879
| Unknown | ESD4 (EARLY IN SHORT DAYS 4) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE |
AT5G60410 | Predictedin vitroAffinity Capture-MStwo hybrid | FSW = 0.0580
| Unknown | SIZ1 DNA BINDING / SUMO LIGASE |
AT3G23890 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0256
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT4G26840 | PredictedPhylogenetic profile method | FSW = 0.0868
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G55160 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2857
| Unknown | SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG |
AT5G20850 | Predictedtwo hybridin vivoin vivotwo hybrid | FSW = 0.0114
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G48360 | Predictedtwo hybrid | FSW = 0.1905
| Unknown | HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G22480 | Predictedtwo hybrid | FSW = 0.0152
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G27120 | Predictedtwo hybrid | FSW = 0.1667
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G15930 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | MICROTUBULE MOTOR |
AT4G31240 | Predictedtwo hybrid | FSW = 0.0879
| Unknown | INVOLVED IN CELL REDOX HOMEOSTASIS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) THIOREDOXIN-LIKE (INTERPROIPR017936) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) C1-LIKE (INTERPROIPR011424) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DC1 DOMAIN-CONTAINING PROTEIN (TAIRAT1G604201) HAS 1190 BLAST HITS TO 724 PROTEINS IN 157 SPECIES ARCHAE - 0 BACTERIA - 225 METAZOA - 381 FUNGI - 0 PLANTS - 174 VIRUSES - 0 OTHER EUKARYOTES - 410 (SOURCE NCBI BLINK) |
AT5G39320 | Predictedtwo hybrid | FSW = 0.1481
| Unknown | UDP-GLUCOSE 6-DEHYDROGENASE PUTATIVE |
AT1G11800 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0635
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT2G21470 | Predictedin vitroAffinity Capture-MSReconstituted Complex | FSW = 0.1499
| Unknown | SAE2 (SUMO-ACTIVATING ENZYME 2) SUMO ACTIVATING ENZYME |
AT3G57870 | PredictedAffinity Capture-MSAffinity Capture-MSin vivoin vitroReconstituted Complextwo hybrid | FSW = 0.1905
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G50680 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.1296
| Unknown | SAE1B (SUMO ACTIVATING ENZYME 1B) SUMO ACTIVATING ENZYME |
AT5G61070 | Predictedin vivoin vitro | FSW = 0.0342
| Unknown | HDA18 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE DEACETYLASE |
AT5G48710 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1500
| Unknown | UBIQUITIN-RELATED |
AT2G32765 | PredictedPhylogenetic profile method | FSW = 0.1333
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
AT5G55170 | PredictedPhylogenetic profile method | FSW = 0.4000
| Unknown | SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3) PROTEIN BINDING / PROTEIN TAG |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454