Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48880 - ( PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) acetyl-CoA C-acyltransferase/ catalytic )

28 Proteins interacs with AT5G48880
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G48230

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1545

Class C:

peroxisome

cytosol

ACAT2 (ACETOACETYL-COA THIOLASE 2) ACETYL-COA C-ACETYLTRANSFERASE/ CATALYTIC
AT2G33150

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1393

Class C:

peroxisome

PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3) ACETYL-COA C-ACYLTRANSFERASE
AT1G04710

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1504

Class C:

peroxisome

PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT3G45780

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0939

Class C:

cytosol

PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT5G47720

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0948

Class C:

cytosol

ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT5G12010

Predicted

Synthetic Lethality

FSW = 0.0646

Unknown

UNKNOWN PROTEIN
AT5G10350

Predicted

biochemical

biochemical

biochemical

biochemical

biochemical

biochemical

far western blotting

FSW = 0.1124

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT2G45960

Predicted

Synthetic Rescue

FSW = 0.0507

Unknown

PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT5G64270

Predicted

Synthetic Lethality

FSW = 0.0061

Unknown

SPLICING FACTOR PUTATIVE
AT1G10070

Predicted

Colocalization

FSW = 0.0296

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G71860

Predicted

Affinity Capture-Western

FSW = 0.0266

Unknown

PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE
AT1G52600

Predicted

biochemical

FSW = 0.0246

Unknown

SIGNAL PEPTIDASE PUTATIVE
AT5G23900

Predicted

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0664

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT1G32090

Predicted

Affinity Capture-MS

FSW = 0.1331

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G29360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

two hybrid

interologs mapping

Synthetic Lethality

Affinity Capture-MS

Co-purification

FSW = 0.2865

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT4G39200

Predicted

biochemical

FSW = 0.0284

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT3G60360

Predicted

Synthetic Lethality

FSW = 0.0534

Unknown

EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT1G75290

Predicted

Synthetic Lethality

FSW = 0.0191

Unknown

OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT2G16230

Predicted

Affinity Capture-MS

FSW = 0.3045

Unknown

CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT2G33560

Predicted

far western blotting

FSW = 0.0797

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT3G46030

Predicted

biochemical

FSW = 0.0737

Unknown

HTB11 DNA BINDING
AT4G04695

Predicted

Co-purification

Synthetic Lethality

Affinity Capture-MS

Co-purification

FSW = 0.0900

Unknown

CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G11920

Predicted

Affinity Capture-Western

two hybrid

Phenotypic Enhancement

interologs mapping

Synthetic Lethality

FSW = 0.0258

Unknown

ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE
AT5G14180

Predicted

synthetic growth defect

FSW = 0.1047

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G27640

Predicted

biochemical

FSW = 0.0087

Unknown

TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G66740

Predicted

Co-purification

FSW = 0.0378

Unknown

SGA2
AT4G33270

Predicted

Gene fusion method

FSW = 0.0626

Unknown

CDC201 SIGNAL TRANSDUCER
AT5G15500

Predicted

Gene fusion method

FSW = 0.0627

Unknown

ANKYRIN REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454