Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48880 - ( PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) acetyl-CoA C-acyltransferase/ catalytic )
28 Proteins interacs with AT5G48880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G48230 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1545
| Class C:peroxisomecytosol | ACAT2 (ACETOACETYL-COA THIOLASE 2) ACETYL-COA C-ACETYLTRANSFERASE/ CATALYTIC |
AT2G33150 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1393
| Class C:peroxisome | PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3) ACETYL-COA C-ACYLTRANSFERASE |
AT1G04710 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1504
| Class C:peroxisome | PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT3G45780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternSynthetic Lethality | FSW = 0.0939
| Class C:cytosol | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G47720 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0948
| Class C:cytosol | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT5G12010 | PredictedSynthetic Lethality | FSW = 0.0646
| Unknown | UNKNOWN PROTEIN |
AT5G10350 | Predictedbiochemicalbiochemicalbiochemicalbiochemicalbiochemicalbiochemicalfar western blotting | FSW = 0.1124
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT2G45960 | PredictedSynthetic Rescue | FSW = 0.0507
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT5G64270 | PredictedSynthetic Lethality | FSW = 0.0061
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G10070 | PredictedColocalization | FSW = 0.0296
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G71860 | PredictedAffinity Capture-Western | FSW = 0.0266
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT1G52600 | Predictedbiochemical | FSW = 0.0246
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT5G23900 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0664
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G32090 | PredictedAffinity Capture-MS | FSW = 0.1331
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G29360 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybridinterologs mappingSynthetic LethalityAffinity Capture-MSCo-purification | FSW = 0.2865
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G39200 | Predictedbiochemical | FSW = 0.0284
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT3G60360 | PredictedSynthetic Lethality | FSW = 0.0534
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT1G75290 | PredictedSynthetic Lethality | FSW = 0.0191
| Unknown | OXIDOREDUCTASE ACTING ON NADH OR NADPH |
AT2G16230 | PredictedAffinity Capture-MS | FSW = 0.3045
| Unknown | CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G33560 | Predictedfar western blotting | FSW = 0.0797
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT3G46030 | Predictedbiochemical | FSW = 0.0737
| Unknown | HTB11 DNA BINDING |
AT4G04695 | PredictedCo-purificationSynthetic LethalityAffinity Capture-MSCo-purification | FSW = 0.0900
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G11920 | PredictedAffinity Capture-Westerntwo hybridPhenotypic Enhancementinterologs mappingSynthetic Lethality | FSW = 0.0258
| Unknown | ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE |
AT5G14180 | Predictedsynthetic growth defect | FSW = 0.1047
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G27640 | Predictedbiochemical | FSW = 0.0087
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G66740 | PredictedCo-purification | FSW = 0.0378
| Unknown | SGA2 |
AT4G33270 | PredictedGene fusion method | FSW = 0.0626
| Unknown | CDC201 SIGNAL TRANSDUCER |
AT5G15500 | PredictedGene fusion method | FSW = 0.0627
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454